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BCYRN1 brain cytoplasmic RNA 1 [ Homo sapiens (human) ]

Gene ID: 618, updated on 13-Nov-2024

Summary

Official Symbol
BCYRN1provided by HGNC
Official Full Name
brain cytoplasmic RNA 1provided by HGNC
Primary source
HGNC:HGNC:1022
See related
Ensembl:ENSG00000236824 MIM:606089; AllianceGenome:HGNC:1022
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BC200; BC200a; LINC00004; NCRNA00004
Summary
This gene, which encodes a neural small non-messenger RNA, is a member of the family of interspersed repetitive DNA, and its product represents an example of a primate tissue-specific RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive domain. It is believed that this gene was retropositionally generated and recruited into a function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have been identified. [provided by RefSeq, Jul 2008]
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Genomic context

See BCYRN1 in Genome Data Viewer
Location:
2p21
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (47335315..47335514)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (47340355..47340554)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (47562454..47562653)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene EPCAM divergent transcript Neighboring gene uncharacterized LOC124907763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:47465802-47466556 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47471001-47471501 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47476213-47476714 Neighboring gene uncharacterized LOC107985882 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15726 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15727 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11462 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47501342-47501842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:47501843-47502343 Neighboring gene MPRA-validated peak3693 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:47519444-47519732 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15728 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15729 Neighboring gene Sharpr-MPRA regulatory regions 1090 and 15339 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15730 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11463 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15731 Neighboring gene Sharpr-MPRA regulatory region 12385 Neighboring gene Sharpr-MPRA regulatory region 1814 Neighboring gene RN7SK pseudogene 119 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:47596083-47596759 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:47596760-47597435 Neighboring gene epithelial cell adhesion molecule Neighboring gene microRNA 559

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Other Names

  • BC200-alpha
  • brain cytoplasmic RNA 1 (analog of mouse Bc1)
  • brain cytoplasmic RNA 1 (non-protein coding)
  • brain cytoplasmic RNA 1, Bc1 analog
  • brain cytoplasmic RNA 200-alpha
  • long intergenic non-protein coding RNA 4
  • non-protein coding RNA 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001568.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AF020057
    Related
    ENST00000418539.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    47335315..47335514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    47340355..47340554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)