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BCYRN1 brain cytoplasmic RNA 1 [ Homo sapiens (human) ]

Gene ID: 618, updated on 17-Jan-2022

Summary

Official Symbol
BCYRN1provided by HGNC
Official Full Name
brain cytoplasmic RNA 1provided by HGNC
Primary source
HGNC:HGNC:1022
See related
Ensembl:ENSG00000236824 MIM:606089
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BC200; BC200a; LINC00004; NCRNA00004
Summary
This gene, which encodes a neural small non-messenger RNA, is a member of the family of interspersed repetitive DNA, and its product represents an example of a primate tissue-specific RNA polymerase III transcript. The RNA sequence is divided into three domains: a 5' portion homologous to the Alu Lm, a central adenosine-rich region, and the terminal 43-nt nonrepetitive domain. It is believed that this gene was retropositionally generated and recruited into a function regulating dendritic protein biosynthesis. At least two pseudogenes of this gene have been identified. [provided by RefSeq, Jul 2008]
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Genomic context

See BCYRN1 in Genome Data Viewer
Location:
2p21
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (47335315..47335514)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (47562454..47562653)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene EPCAM divergent transcript Neighboring gene uncharacterized LOC107985882 Neighboring gene Sharpr-MPRA regulatory regions 1090 and 15339 Neighboring gene Sharpr-MPRA regulatory region 12385 Neighboring gene Sharpr-MPRA regulatory region 1814

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
A meta-analysis of 87,040 individuals identifies 23 new susceptibility loci for prostate cancer.
EBI GWAS Catalog

General gene information

Other Names

  • BC200-alpha
  • brain cytoplasmic RNA 1 (analog of mouse Bc1)
  • brain cytoplasmic RNA 1 (non-protein coding)
  • brain cytoplasmic RNA 1, Bc1 analog
  • brain cytoplasmic RNA 200-alpha
  • long intergenic non-protein coding RNA 4
  • non-protein coding RNA 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001568.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AF020057
    Related
    ENST00000418539.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    47335315..47335514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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