U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cnot9 CCR4-NOT transcription complex, subunit 9 [ Mus musculus (house mouse) ]

Gene ID: 58184, updated on 12-May-2024

Summary

Official Symbol
Cnot9provided by MGI
Official Full Name
CCR4-NOT transcription complex, subunit 9provided by MGI
Primary source
MGI:MGI:1928902
See related
Ensembl:ENSMUSG00000026174 AllianceGenome:MGI:1928902
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fl10; Rqcd1; 2610007F23Rik
Summary
Predicted to enable several functions, including epidermal growth factor receptor binding activity; nuclear receptor coactivator activity; and protein homodimerization activity. Acts upstream of or within cytokine-mediated signaling pathway. Located in P-body. Is expressed in several structures, including alimentary system; brain; branchial arch; hemolymphoid system gland; and sensory organ. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 22.1), limb E14.5 (RPKM 19.1) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Cnot9 in Genome Data Viewer
Location:
1 C4; 1 38.54 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (74545192..74570001)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (74506036..74530842)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_01337 Neighboring gene predicted gene, 53562 Neighboring gene CTD small phosphatase 1 Neighboring gene microRNA 26b Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene STARR-positive B cell enhancer mm9_chr1:74552349-74552650 Neighboring gene phospholipase C, delta 4 Neighboring gene STARR-seq mESC enhancer starr_01339 Neighboring gene zinc finger protein 142 Neighboring gene STARR-positive B cell enhancer ABC_E791

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables epidermal growth factor receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables kinase binding ISO
Inferred from Sequence Orthology
more info
 
enables nuclear receptor coactivator activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
enables protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
part_of CCR4-NOT complex ISO
Inferred from Sequence Orthology
more info
 
part_of CCR4-NOT core complex IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in P-body IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in P-body IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
CCR4-NOT transcription complex subunit 9
Names
EPO-induced protein FL10
RCD1 required for cell differentiation 1 homolog
cell differentiation protein RCD1 homolog
cell differentiation protein RQCD1 homolog
rcd-1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_021383.5NP_067358.1  CCR4-NOT transcription complex subunit 9

    See identical proteins and their annotated locations for NP_067358.1

    Status: VALIDATED

    Source sequence(s)
    BC050898, BC051948, BY705231
    Consensus CDS
    CCDS35615.1
    UniProtKB/Swiss-Prot
    Q9JKY0
    Related
    ENSMUSP00000084466.6, ENSMUST00000087215.7
    Conserved Domains (1) summary
    pfam04078
    Location:25283
    Rcd1; Cell differentiation family, Rcd1-like

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    74545192..74570001
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496171.4XP_006496234.1  CCR4-NOT transcription complex subunit 9 isoform X1

    See identical proteins and their annotated locations for XP_006496234.1

    Conserved Domains (1) summary
    pfam04078
    Location:1229
    Rcd1; Cell differentiation family, Rcd1-like