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FAM160B1 family with sequence similarity 160 member B1 [ Homo sapiens (human) ]

Gene ID: 57700, updated on 5-Aug-2018

Summary

Official Symbol
FAM160B1provided by HGNC
Official Full Name
family with sequence similarity 160 member B1provided by HGNC
Primary source
HGNC:HGNC:29320
See related
Ensembl:ENSG00000151553 MIM:617312; Vega:OTTHUMG00000019092
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA1600; bA106M7.3
Expression
Ubiquitous expression in bone marrow (RPKM 14.0), endometrium (RPKM 9.6) and 25 other tissues See more
Orthologs

Genomic context

See FAM160B1 in Genome Data Viewer
Location:
10q25.3
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 10 NC_000010.11 (114821744..114899827)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (116581503..116659586)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1 Neighboring gene uncharacterized LOC101927692 Neighboring gene TATA-box binding protein associated factor 9b pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 3306 Neighboring gene ribosomal protein L15 pseudogene 13

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1600, DKFZp686D10123

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135051.1NP_001128523.1  protein FAM160B1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AL137025, BC037207
    Consensus CDS
    CCDS44480.1
    UniProtKB/Swiss-Prot
    Q5W0V3
    Related
    ENSP00000358253.3, OTTHUMP00000020551, ENST00000369250.7, OTTHUMT00000050500
    Conserved Domains (1) summary
    pfam10257
    Location:78495
    RAI16-like; Retinoic acid induced 16-like protein
  2. NM_020940.3NP_065991.3  protein FAM160B1 isoform a

    See identical proteins and their annotated locations for NP_065991.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AB046820, AI521900, BC037207, CR933692
    Consensus CDS
    CCDS31290.1
    UniProtKB/Swiss-Prot
    Q5W0V3
    Related
    ENSP00000358251.4, OTTHUMP00000020550, ENST00000369248.8, OTTHUMT00000050499
    Conserved Domains (1) summary
    pfam10257
    Location:78495
    RAI16-like; Retinoic acid induced 16-like protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p12 Primary Assembly

    Range
    114821744..114899827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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