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FHIP2A FHF complex subunit HOOK interacting protein 2A [ Homo sapiens (human) ]

Gene ID: 57700, updated on 6-Oct-2024

Summary

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Official Symbol
FHIP2Aprovided by HGNC
Official Full Name
FHF complex subunit HOOK interacting protein 2Aprovided by HGNC
Primary source
HGNC:HGNC:29320
See related
Ensembl:ENSG00000151553 MIM:617312; AllianceGenome:HGNC:29320
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM160B1; KIAA1600; bA106M7.3
Expression
Ubiquitous expression in bone marrow (RPKM 14.0), endometrium (RPKM 9.6) and 25 other tissues See more
Orthologs
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Genomic context

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See FHIP2A in Genome Data Viewer
Location:
10q25.3
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (114821780..114899832)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (115715884..115793964)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (116581539..116659591)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene actin binding LIM protein 1 Neighboring gene uncharacterized LOC101927692 Neighboring gene translation initiation factor IF-2-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4089 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4090 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4091 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2846 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:116581943-116582443 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2847 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4092 Neighboring gene TATA-box binding protein associated factor 9b pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:116640543-116641171 Neighboring gene Sharpr-MPRA regulatory region 3306 Neighboring gene ribosomal protein L15 pseudogene 13 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4093 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2849 Neighboring gene MPRA-validated peak1102 silencer Neighboring gene RNA, U6 small nuclear 1121, pseudogene Neighboring gene TruB pseudouridine synthase family member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. FAM160B1 deficit associated with microcephaly, severe intellectual disability, ataxia, behavioral abnormalities and speech problems. Mavioğlu RN, et al. Clin Genet, 2019 Nov. PMID 31353455
  2. Cytoplasmic dynein-1 cargo diversity is mediated by the combinatorial assembly of FTS-Hook-FHIP complexes. Christensen JR, et al. Elife, 2021 Dec 9. PMID 34882091, Free PMC Article
  3. Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. Nagase T, et al. DNA Res, 2000 Aug 31. PMID 10997877
  4. ZFP36L2 is a cell cycle-regulated CCCH protein necessary for DNA lesion-induced S-phase arrest. Noguchi A, et al. Biol Open, 2018 Mar 12. PMID 29449217, Free PMC Article
  5. Identifications of novel host cell factors that interact with the receptor-binding domain of the SARS-CoV-2 spike protein. Tang X, et al. J Biol Chem, 2024 Jun. PMID 38777146, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • KIAA1600, DKFZp686D10123

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
FHF complex subunit HOOK interacting protein 2A
Names
family with sequence similarity 160 member B1
protein FAM160B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001135051.2 → NP_001128523.1  FHF complex subunit HOOK interacting protein 2A isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AL137025, BC037207
    Consensus CDS
    CCDS44480.1
    UniProtKB/TrEMBL
    A0AA34QVS8
    Related
    ENSP00000358253.3, ENST00000369250.7
    Conserved Domains (1) summary
    pfam10257
    Location:78 → 495
    RAI16-like; Retinoic acid induced 16-like protein

  2. NM_020940.4 → NP_065991.3  FHF complex subunit HOOK interacting protein 2A isoform a

    See identical proteins and their annotated locations for NP_065991.3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AB046820, AI521900, BC037207, CR933692
    Consensus CDS
    CCDS31290.1
    UniProtKB/Swiss-Prot
    Q5H9P7, Q5W0V2, Q5W0V3, Q8IY76, Q9HCH2
    UniProtKB/TrEMBL
    A0AA34QVS8
    Related
    ENSP00000358251.4, ENST00000369248.9
    Conserved Domains (1) summary
    pfam10257
    Location:78 → 495
    RAI16-like; Retinoic acid induced 16-like protein

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    114821780..114899832
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    115715884..115793964
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5W0V3.1 GenPept UniProtKB/Swiss-Prot:Q5W0V3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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Chemical Information
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