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ODF2L outer dense fiber of sperm tails 2 like [ Homo sapiens (human) ]

Gene ID: 57489, updated on 13-Mar-2020

Summary

Official Symbol
ODF2Lprovided by HGNC
Official Full Name
outer dense fiber of sperm tails 2 likeprovided by HGNC
Primary source
HGNC:HGNC:29225
See related
Ensembl:ENSG00000122417
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in spleen (RPKM 2.6), lung (RPKM 2.5) and 25 other tissues See more
Orthologs

Genomic context

See ODF2L in Genome Data Viewer
Location:
1p22.3
Exon count:
19
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (86346824..86396342, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (86812507..86862025, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2795 Neighboring gene uncharacterized LOC105378825 Neighboring gene microRNA 7856 Neighboring gene ribosomal protein L7 like 1 pseudogene Neighboring gene chloride channel accessory 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1229, MGC111060

Gene Ontology Provided by GOA

Process Evidence Code Pubs
cell projection organization IEA
Inferred from Electronic Annotation
more info
 
negative regulation of cilium assembly IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
centriolar satellite IDA
Inferred from Direct Assay
more info
PubMed 
centriole IEA
Inferred from Electronic Annotation
more info
 
centrosome IDA
Inferred from Direct Assay
more info
PubMed 
ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
protein BCAP
Names
basal body centriole-associated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007022.3NP_001007023.2  protein BCAP isoform b

    See identical proteins and their annotated locations for NP_001007023.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding region, compared to variant 1, resulting in a protein (isoform b) that maintains the reading frame but is longer than isoform a.
    Source sequence(s)
    AB033055, AK303209, AL136382, BC047368, BX499763, CD687053
    Consensus CDS
    CCDS41354.2
    UniProtKB/Swiss-Prot
    Q9ULJ1
    Related
    ENSP00000359600.2, ENST00000359242.7
    Conserved Domains (1) summary
    COG1196
    Location:377621
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
  2. NM_001184765.1NP_001171694.1  protein BCAP isoform c

    See identical proteins and their annotated locations for NP_001171694.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting protein (isoform c) has a distinct C-terminus but is the same length as isoform a.
    Source sequence(s)
    AK303209, AL136382, BC047368, BC091490, BM993592, BX499763, CD687053
    UniProtKB/Swiss-Prot
    Q9ULJ1
    Conserved Domains (2) summary
    COG1196
    Location:41315
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    TIGR02168
    Location:384618
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
  3. NM_001184766.1NP_001171695.1  protein BCAP isoform d

    See identical proteins and their annotated locations for NP_001171695.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting protein (isoform d) has a distinct C-terminus and is shorter than isoform a.
    Source sequence(s)
    AK303209, AL136382, BC047368, BM993592, BX499763, CD687053
    Consensus CDS
    CCDS53339.1
    UniProtKB/Swiss-Prot
    Q9ULJ1
    Related
    ENSP00000359597.2, ENST00000370566.7
    Conserved Domains (1) summary
    cl23720
    Location:307420
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
  4. NM_001366779.1NP_001353708.1  protein BCAP isoform e

    Status: VALIDATED

    Source sequence(s)
    AC119749, AL136382
    Conserved Domains (1) summary
    cl25732
    Location:192495
    SMC_N; RecF/RecN/SMC N terminal domain
  5. NM_001366781.1NP_001353710.1  protein BCAP isoform f

    Status: VALIDATED

    Source sequence(s)
    AC119749, AL136382
    Conserved Domains (1) summary
    cl25732
    Location:323626
    SMC_N; RecF/RecN/SMC N terminal domain
  6. NM_001366782.1NP_001353711.1  protein BCAP isoform e

    Status: VALIDATED

    Source sequence(s)
    AC119749, AL136382
    Related
    ENSP00000433092.1, ENST00000460698.6
    Conserved Domains (1) summary
    cl25732
    Location:192495
    SMC_N; RecF/RecN/SMC N terminal domain
  7. NM_001366783.1NP_001353712.1  protein BCAP isoform g

    Status: VALIDATED

    Source sequence(s)
    AC119749, AL136382
  8. NM_001366784.1NP_001353713.1  protein BCAP isoform f

    Status: VALIDATED

    Source sequence(s)
    AC119749, AL136382
    Conserved Domains (1) summary
    cl25732
    Location:323626
    SMC_N; RecF/RecN/SMC N terminal domain
  9. NM_020729.3NP_065780.2  protein BCAP isoform a

    See identical proteins and their annotated locations for NP_065780.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform a.
    Source sequence(s)
    AK303209, AL136382, BC047368, BX499763, CD687053
    Consensus CDS
    CCDS30763.2
    UniProtKB/Swiss-Prot
    Q9ULJ1
    Related
    ENSP00000294678.2, ENST00000294678.6
    Conserved Domains (1) summary
    cl23720
    Location:307420
    RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    86346824..86396342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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