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LINC00869 long intergenic non-protein coding RNA 869 [ Homo sapiens (human) ]

Gene ID: 57234, updated on 25-Oct-2022

Summary

Official Symbol
LINC00869provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 869provided by HGNC
Primary source
HGNC:HGNC:29050
See related
Ensembl:ENSG00000291158 AllianceGenome:HGNC:29050
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM91A2
Summary
Predicted to be involved in intracellular protein transport and vesicle tethering to Golgi. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in spleen (RPKM 3.2), lymph node (RPKM 3.0) and 25 other tissues See more
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Genomic context

See LINC00869 in Genome Data Viewer
Location:
1q21.2
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (149607012..149679523)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (148770721..148803659)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (149576161..149651107)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101060227 Neighboring gene tRNA-Asn (anticodon GTT) 25-1 Neighboring gene uncharacterized LOC124904410 Neighboring gene peptidylprolyl isomerase A like 4C Neighboring gene uncharacterized LOC124904409 Neighboring gene U1 spliceosomal RNA Neighboring gene protein FAM91A1-like Neighboring gene RNA, U1 small nuclear 68, pseudogene Neighboring gene uncharacterized LOC644634

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • family with sequence similarity 91, member A2

Clone Names

  • FLJ97060, FLJ99375, KIAA0493

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in intracellular protein transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vesicle tethering to Golgi IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cytoplasmic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_111950.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) currently represents the longest transcript.
    Source sequence(s)
    AB007962, AC242842, CB217586
    Related
    ENST00000610578.4
  2. NR_111951.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) lacks multiple 3' exons and contains an alternate 3' exon structure, resulting in a shorter transcript, compared to variant 6.
    Source sequence(s)
    AC242842, AC243772
  3. NR_111952.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8) lacks multiple 3' exons and contains an alternate 3' exon structure, resulting in a shorter transcript, compared to variant 6.
    Source sequence(s)
    AC242842, AC243772
  4. NR_111953.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (9) lacks multiple 3' exons and contains an alternate 3' exon structure, resulting in a shorter transcript, compared to variant 6.
    Source sequence(s)
    AC242842, AC243772, BU602007

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    149607012..149679523
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    148770721..148803659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_046135.1: Suppressed sequence

    Description
    NR_046135.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  2. NR_046136.1: Suppressed sequence

    Description
    NR_046136.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  3. NR_046137.1: Suppressed sequence

    Description
    NR_046137.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  4. NR_046138.1: Suppressed sequence

    Description
    NR_046138.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.
  5. NR_046139.1: Suppressed sequence

    Description
    NR_046139.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.