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NIPAL3 NIPA like domain containing 3 [ Homo sapiens (human) ]

Gene ID: 57185, updated on 7-Jun-2020

Summary

Official Symbol
NIPAL3provided by HGNC
Official Full Name
NIPA like domain containing 3provided by HGNC
Primary source
HGNC:HGNC:25233
See related
Ensembl:ENSG00000001461
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NPAL3; DJ462O23.2
Expression
Broad expression in brain (RPKM 18.3), prostate (RPKM 16.8) and 24 other tissues See more
Orthologs

Genomic context

See NIPAL3 in Genome Data Viewer
Location:
1p36.11
Exon count:
18
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (24413360..24472983)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (24742245..24799473)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene GRHL3 antisense RNA 1 Neighboring gene grainyhead like transcription factor 3 Neighboring gene Sharpr-MPRA regulatory region 15224 Neighboring gene sperm tail PG-rich repeat containing 1 Neighboring gene RCAN3 antisense RNA Neighboring gene RCAN family member 3 Neighboring gene Sharpr-MPRA regulatory region 2491 Neighboring gene NCMAP divergent transcript

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp686E22155

Gene Ontology Provided by GOA

Function Evidence Code Pubs
magnesium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
magnesium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
magnesium ion transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001322854.1NP_001309783.1  NIPA-like protein 3 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS30631.1
    UniProtKB/Swiss-Prot
    Q6P499
    Conserved Domains (1) summary
    cl23754
    Location:32326
    EamA; EamA-like transporter family
  2. NM_001322855.1NP_001309784.1  NIPA-like protein 3 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS30631.1
    UniProtKB/Swiss-Prot
    Q6P499
    Conserved Domains (1) summary
    cl23754
    Location:32326
    EamA; EamA-like transporter family
  3. NM_001322856.1NP_001309785.1  NIPA-like protein 3 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS30631.1
    UniProtKB/Swiss-Prot
    Q6P499
    Conserved Domains (1) summary
    cl23754
    Location:32326
    EamA; EamA-like transporter family
  4. NM_001322857.1NP_001309786.1  NIPA-like protein 3 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS30631.1
    UniProtKB/Swiss-Prot
    Q6P499
    Conserved Domains (1) summary
    cl23754
    Location:32326
    EamA; EamA-like transporter family
  5. NM_001322858.1NP_001309787.1  NIPA-like protein 3 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Conserved Domains (1) summary
    cl23754
    Location:10165
    EamA; EamA-like transporter family
  6. NM_001322859.1NP_001309788.1  NIPA-like protein 3 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Conserved Domains (1) summary
    cl23754
    Location:10165
    EamA; EamA-like transporter family
  7. NM_001322860.1NP_001309789.1  NIPA-like protein 3 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Conserved Domains (1) summary
    cl23754
    Location:10165
    EamA; EamA-like transporter family
  8. NM_001322861.1NP_001309790.1  NIPA-like protein 3 isoform b

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Conserved Domains (1) summary
    cl23754
    Location:10165
    EamA; EamA-like transporter family
  9. NM_001322862.1NP_001309791.1  NIPA-like protein 3 isoform c

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS81282.1
    UniProtKB/Swiss-Prot
    Q6P499
    Related
    ENSP00000003912.3, ENST00000003912.7
    Conserved Domains (1) summary
    cl23754
    Location:1244
    EamA; EamA-like transporter family
  10. NM_001322863.1NP_001309792.1  NIPA-like protein 3 isoform c

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS81282.1
    UniProtKB/Swiss-Prot
    Q6P499
    Conserved Domains (1) summary
    cl23754
    Location:1244
    EamA; EamA-like transporter family
  11. NM_001322864.1NP_001309793.1  NIPA-like protein 3 isoform d

    Status: VALIDATED

    Source sequence(s)
    AL031431
  12. NM_001322865.2NP_001309794.1  NIPA-like protein 3 isoform e

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS81280.1
    UniProtKB/Swiss-Prot
    Q6P499
    Related
    ENSP00000350722.4, ENST00000358028.8
    Conserved Domains (1) summary
    cl23754
    Location:32201
    EamA; EamA-like transporter family
  13. NM_001322866.1NP_001309795.1  NIPA-like protein 3 isoform f

    Status: VALIDATED

    Source sequence(s)
    AL031431
  14. NM_001322868.1NP_001309797.1  NIPA-like protein 3 isoform g

    Status: VALIDATED

    Source sequence(s)
    AL031431
  15. NM_001330409.1NP_001317338.1  NIPA-like protein 3 isoform h

    Status: VALIDATED

    Source sequence(s)
    AL031431
    Consensus CDS
    CCDS81281.1
    UniProtKB/TrEMBL
    A6NN97
  16. NM_020448.5NP_065181.1  NIPA-like protein 3 isoform a

    See identical proteins and their annotated locations for NP_065181.1

    Status: VALIDATED

    Source sequence(s)
    AL031431, BC063583, DA223169
    Consensus CDS
    CCDS30631.1
    UniProtKB/Swiss-Prot
    Q6P499
    Related
    ENSP00000363520.4, ENST00000374399.9
    Conserved Domains (1) summary
    cl23754
    Location:32326
    EamA; EamA-like transporter family

RNA

  1. NR_136506.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031431
  2. NR_136507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031431
  3. NR_136508.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL031431

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    24413360..24472983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011541808.2XP_011540110.1  NIPA-like protein 3 isoform X2

    Conserved Domains (1) summary
    cl23754
    Location:18312
    EamA; EamA-like transporter family
  2. XM_017001868.1XP_016857357.1  NIPA-like protein 3 isoform X1

  3. XM_017001869.1XP_016857358.1  NIPA-like protein 3 isoform X3

    UniProtKB/TrEMBL
    A6NN97
    Related
    ENSP00000343549.2, ENST00000339255.2
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