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FAM219B family with sequence similarity 219 member B [ Homo sapiens (human) ]

Gene ID: 57184, updated on 13-Mar-2020

Summary

Official Symbol
FAM219Bprovided by HGNC
Official Full Name
family with sequence similarity 219 member Bprovided by HGNC
Primary source
HGNC:HGNC:24695
See related
Ensembl:ENSG00000178761
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C15orf17
Expression
Ubiquitous expression in fat (RPKM 16.4), prostate (RPKM 16.2) and 25 other tissues See more
Orthologs

Genomic context

See FAM219B in Genome Data Viewer
Location:
15q24.1-q24.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 15 NC_000015.10 (74899174..74907228, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (75192328..75199462, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene microRNA 6882 Neighboring gene unc-51 like kinase 3 Neighboring gene secretory carrier membrane protein 2 Neighboring gene mannose phosphate isomerase Neighboring gene cytochrome c oxidase subunit 5A Neighboring gene ribonuclease P and MRP subunit p25

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ00005

General protein information

Preferred Names
protein FAM219B
Names
uncharacterized protein C15orf17

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321920.2NP_001308849.1  protein FAM219B isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), along with variants 1 and 3, encodes isoform a.
    Source sequence(s)
    AC125435, BC064575
    Consensus CDS
    CCDS32295.1
    UniProtKB/Swiss-Prot
    Q5XKK7
    Related
    ENSP00000454719.1, ENST00000563119.5
    Conserved Domains (1) summary
    pfam15260
    Location:72198
    FAM219A; Protein family FAM219A
  2. NM_001321921.2NP_001308850.1  protein FAM219B isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), along with variants 1 and 2, encodes isoform a.
    Source sequence(s)
    AC125435
    Consensus CDS
    CCDS32295.1
    UniProtKB/Swiss-Prot
    Q5XKK7
    Related
    ENSP00000456404.1, ENST00000563671.5
    Conserved Domains (1) summary
    pfam15260
    Location:72198
    FAM219A; Protein family FAM219A
  3. NM_001321922.2NP_001308851.1  protein FAM219B isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4), along with variant 5, encodes isoform b.
    Source sequence(s)
    AC125435
    Related
    ENSP00000454277.1, ENST00000562698.5
    Conserved Domains (1) summary
    pfam15260
    Location:72197
    FAM219A; Protein family FAM219A
  4. NM_001321923.2NP_001308852.1  protein FAM219B isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5), along with variant 4, encodes isoform b.
    Source sequence(s)
    AC125435
    Conserved Domains (1) summary
    pfam15260
    Location:72197
    FAM219A; Protein family FAM219A
  5. NM_020447.5NP_065180.1  protein FAM219B isoform a

    See identical proteins and their annotated locations for NP_065180.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1), along with variants 2 and 3, encodes isoform a.
    Source sequence(s)
    AC125435, DB153105
    Consensus CDS
    CCDS32295.1
    UniProtKB/Swiss-Prot
    Q5XKK7
    Related
    ENSP00000350260.5, ENST00000357635.10
    Conserved Domains (1) summary
    pfam15260
    Location:72198
    FAM219A; Protein family FAM219A

RNA

  1. NR_135841.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  2. NR_135842.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  3. NR_135843.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  4. NR_135844.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  5. NR_135845.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  6. NR_135846.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  7. NR_135847.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  8. NR_135848.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
    Related
    ENST00000569524.5
  9. NR_135849.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  10. NR_135850.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  11. NR_135851.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  12. NR_135852.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  13. NR_135853.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435
  14. NR_135854.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC125435

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p13 Primary Assembly

    Range
    74899174..74907228 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017022433.2XP_016877922.1  protein FAM219B isoform X1

    Conserved Domains (1) summary
    pfam15260
    Location:72197
    FAM219A; Protein family FAM219A

RNA

  1. XR_243118.4 RNA Sequence

  2. XR_429468.3 RNA Sequence

  3. XR_002957668.1 RNA Sequence

  4. XR_243117.4 RNA Sequence

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