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CMC2 C-X9-C motif containing 2 [ Homo sapiens (human) ]

Gene ID: 56942, updated on 7-Jun-2020

Summary

Official Symbol
CMC2provided by HGNC
Official Full Name
C-X9-C motif containing 2provided by HGNC
Primary source
HGNC:HGNC:24447
See related
Ensembl:ENSG00000103121
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DC13; C16orf61; 2310061C15Rik
Expression
Ubiquitous expression in testis (RPKM 22.1), heart (RPKM 16.6) and 25 other tissues See more
Orthologs

Genomic context

See CMC2 in Genome Data Viewer
Location:
16q23.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (80966448..81007036, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (81009699..81040713, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene chromodomain Y like 2 Neighboring gene androgen receptor regulated long noncoding RNA 1 Neighboring gene CENPN antisense RNA 1 Neighboring gene centromere protein N Neighboring gene uncharacterized LOC105371361 Neighboring gene chromosome 16 open reading frame 46 Neighboring gene ATM interactor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrion IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
COX assembly mitochondrial protein 2 homolog
Names
C-x(9)-C motif containing 2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351967.2NP_001338896.1  COX assembly mitochondrial protein 2 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718
    Consensus CDS
    CCDS10930.1
    Conserved Domains (1) summary
    pfam08583
    Location:170
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
  2. NM_001351968.2NP_001338897.1  COX assembly mitochondrial protein 2 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, DN989742
    Consensus CDS
    CCDS10930.1
    Related
    ENSP00000455457.2, ENST00000565650.5
    Conserved Domains (1) summary
    pfam08583
    Location:170
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
  3. NM_001351970.2NP_001338899.1  COX assembly mitochondrial protein 2 homolog isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, AF201935, BM314575
    Consensus CDS
    CCDS10930.1
    Conserved Domains (1) summary
    pfam08583
    Location:170
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
  4. NM_001351973.2NP_001338902.1  COX assembly mitochondrial protein 2 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718
    Conserved Domains (1) summary
    pfam08583
    Location:35104
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like
  5. NM_020188.5NP_064573.1  COX assembly mitochondrial protein 2 homolog isoform 1

    See identical proteins and their annotated locations for NP_064573.1

    Status: VALIDATED

    Source sequence(s)
    AC009079, BC032631, HY000186
    Consensus CDS
    CCDS10930.1
    UniProtKB/Swiss-Prot
    Q9NRP2
    Related
    ENSP00000219400.3, ENST00000219400.8
    Conserved Domains (1) summary
    pfam08583
    Location:170
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

RNA

  1. NR_147838.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, KF570268
  2. NR_147839.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718
  3. NR_147840.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, KF570268
  4. NR_147841.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, AI038286, CD105314
  5. NR_147842.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, AF201935, BU601437
  6. NR_147843.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009079, AC092718, AF201935, CD105314

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    80966448..81007036 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017023461.2XP_016878950.1  COX assembly mitochondrial protein 2 homolog isoform X1

  2. XM_017023462.2XP_016878951.1  COX assembly mitochondrial protein 2 homolog isoform X2

  3. XM_017023467.2XP_016878956.1  COX assembly mitochondrial protein 2 homolog isoform X4

    UniProtKB/Swiss-Prot
    Q9NRP2
    Related
    ENSP00000456841.1, ENST00000564249.5
    Conserved Domains (1) summary
    pfam08583
    Location:170
    Cmc1; Cytochrome c oxidase biogenesis protein Cmc1 like

RNA

  1. XR_002957831.1 RNA Sequence

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