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LMJF_30_1280 putative vacuolar assembly protein vps41 [ Leishmania major strain Friedlin ]

Gene ID: 5653659, updated on 21-Dec-2023

Summary

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Gene symbol
LMJF_30_1280
Gene description
putative vacuolar assembly protein vps41
Locus tag
LMJF_30_1280
Gene type
protein coding
RNA name
putative vacuolar assembly protein vps41
RefSeq status
PROVISIONAL
Organism
Leishmania major strain Friedlin (strain: Friedlin)
Lineage
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania
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Genomic context

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See LMJF_30_1280 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
1
Sequence:
Chromosome: 30; NC_007271.2 (441224..445567)

Chromosome 30 - NC_007271.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene putative U3 small nuclear ribonucleoprotein (snRNP) Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_007271.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the kinetoplastid parasite, Leishmania major. Ivens AC, et al. Science, 2005 Jul 15. PMID 16020728, Free PMC Article
  2. Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Rogers MB, et al. Genome Res, 2011 Dec. PMID 22038252, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of HOPS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
putative vacuolar assembly protein vps41

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_007271.2 Reference assembly

    Range
    441224..445567
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001684671.2 → XP_001684723.1  putative vacuolar assembly protein vps41 [Leishmania major strain Friedlin]

    See identical proteins and their annotated locations for XP_001684723.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q4Q7H5
    Conserved Domains (2) summary
    cl17238
    Location:1347 → 1379
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl26078
    Location:965 → 1093
    Clathrin; Region in Clathrin and VPS
Nucleotide Protein
Heading Accession and Version

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