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ankrd13d ankyrin repeat domain 13 family, member D [ Danio rerio (zebrafish) ]

Gene ID: 562931, updated on 17-Aug-2024

Summary

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Official Symbol
ankrd13dprovided by ZNC
Official Full Name
ankyrin repeat domain 13 family, member Dprovided by ZNC
Primary source
ZFIN:ZDB-GENE-101007-3
See related
Ensembl:ENSDARG00000098140 AllianceGenome:ZFIN:ZDB-GENE-101007-3
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to be located in late endosome and plasma membrane. Predicted to be active in cytoplasm. Orthologous to human ANKRD13D (ankyrin repeat domain 13D). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (21782619..21816706)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (21485273..21519461)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene syntaxin 3b Neighboring gene lysine (K)-specific demethylase 2Ab Neighboring gene C-terminal binding protein 1 Neighboring gene spondin 2a, extracellular matrix protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in late endosome IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 13D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    21782619..21816706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291049.3 → XP_009289324.1  ankyrin repeat domain-containing protein 13D isoform X1

    UniProtKB/TrEMBL
    A0A8M3AHV3
    Conserved Domains (4) summary
    cd00204
    Location:7 → 95
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam11904
    Location:153 → 469
    GPCR_chapero_1; GPCR-chaperone
    pfam13637
    Location:38 → 91
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:7 → 35
    ANK; ANK repeat [structural motif]

  2. XM_686296.7 → XP_691388.3  ankyrin repeat domain-containing protein 13D isoform X2

    UniProtKB/TrEMBL
    A0A0R4IY87, A0A8N7TEX0
    Related
    ENSDARP00000139774.1, ENSDART00000170784.2
    Conserved Domains (4) summary
    cd00204
    Location:7 → 95
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam11904
    Location:153 → 469
    GPCR_chapero_1; GPCR-chaperone
    pfam13637
    Location:38 → 91
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:7 → 35
    ANK; ANK repeat [structural motif]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394904.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    2079..21703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472773.1 → XP_021328448.1  ankyrin repeat domain-containing protein 13D isoform X3

    UniProtKB/TrEMBL
    A0A8M9PN48
    Conserved Domains (1) summary
    pfam11904
    Location:2 → 287
    GPCR_chapero_1; GPCR-chaperone

  2. XM_021472774.1 → XP_021328449.1  ankyrin repeat domain-containing protein 13D isoform X4

    UniProtKB/TrEMBL
    A0A8M9PUB3
    Conserved Domains (1) summary
    pfam11904
    Location:2 → 287
    GPCR_chapero_1; GPCR-chaperone
Nucleotide Protein Strain
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