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LOC5576032 probable chitinase 10 [ Aedes aegypti (yellow fever mosquito) ]

Gene ID: 5576032, updated on 23-Mar-2024

Summary

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Gene symbol
LOC5576032
Gene description
probable chitinase 10
See related
VectorBase:AAEL012268
Gene type
protein coding
RefSeq status
MODEL
Organism
Aedes aegypti
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Culicinae; Aedini; Aedes; Stegomyia
Also known as
CHT2; chitinase; AAEL012268
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Genomic context

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Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
101 current AaegL5.0 (GCF_002204515.2) 2 NC_035108.1 (384387914..384414521, complement)

Chromosome 2 - NC_035108.1Genomic Context describing neighboring genes Neighboring gene CD109 antigen Neighboring gene probable 39S ribosomal protein L24, mitochondrial Neighboring gene probable cytosolic Fe-S cluster assembly factor AAEL012261 Neighboring gene RNA polymerase I-specific transcription initiation factor RRN3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_035108.1 Chromosome 2 Reference AaegL5.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The neurotranscriptome of the Aedes aegypti mosquito. Matthews BJ, et al. BMC Genomics, 2016 Jan 6. PMID 26738925, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable chitinase 10
Names
brain chitinase and chia

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aedes aegypti Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AaegL5.0 Primary Assembly

Genomic

  1. NC_035108.1 Reference AaegL5.0 Primary Assembly

    Range
    384387914..384414521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021846923.1 → XP_021702615.1  probable chitinase 10

    UniProtKB/TrEMBL
    A0A6I8TEM4, Q16ML3
    Conserved Domains (3) summary
    cd02872
    Location:1007 → 1371
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:695 → 741
    ChtBD2; Chitin-binding domain type 2
    pfam01607
    Location:1900 → 1942
    CBM_14; Chitin binding Peritrophin-A domain

  2. XM_021846924.1 → XP_021702616.1  probable chitinase 10

    UniProtKB/TrEMBL
    A0A6I8TEM4, Q16ML3
    Conserved Domains (3) summary
    cd02872
    Location:1007 → 1371
    GH18_chitolectin_chitotriosidase; This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active ...
    smart00494
    Location:695 → 741
    ChtBD2; Chitin-binding domain type 2
    pfam01607
    Location:1900 → 1942
    CBM_14; Chitin binding Peritrophin-A domain
Nucleotide Protein Strain
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