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c1ql1l2 complement component 1, q subcomponent-like 1-like 2 [ Danio rerio (zebrafish) ]

Gene ID: 556064, updated on 18-Sep-2024

Summary

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Official Symbol
c1ql1l2provided by ZNC
Official Full Name
complement component 1, q subcomponent-like 1-like 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-240618-1
See related
Ensembl:ENSDARG00000028521
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (31395657..31434092)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (31263959..31299631)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene DELTA-actitoxin-Aeq1c-like Neighboring gene uncharacterized LOC137490632 Neighboring gene uncharacterized LOC137490633 Neighboring gene coiled-coil domain containing 43

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C1q-related factor
Names
complement component 1, q subcomponent-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    31395657..31434092
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_678773.8 → XP_683865.2  C1q-related factor

    UniProtKB/TrEMBL
    A0A8N7TE68
    Related
    ENSDARP00000126158.1, ENSDART00000151423.2
    Conserved Domains (1) summary
    pfam00386
    Location:136 → 260
    C1q; C1q domain
Nucleotide Protein
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