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GPALPP1 GPALPP motifs containing 1 [ Homo sapiens (human) ]

Gene ID: 55425, updated on 1-Jun-2020

Summary

Official Symbol
GPALPP1provided by HGNC
Official Full Name
GPALPP motifs containing 1provided by HGNC
Primary source
HGNC:HGNC:20298
See related
Ensembl:ENSG00000133114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LSR7; AD029; KIAA1704; bA245H20.2
Expression
Ubiquitous expression in endometrium (RPKM 5.8), thyroid (RPKM 5.7) and 25 other tissues See more
Orthologs

Genomic context

See GPALPP1 in Genome Data Viewer
Location:
13q14.12
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (44989530..45037669)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (45563673..45607743)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107984619 Neighboring gene tRNA-Glu (anticodon TTC) 2-1 Neighboring gene nuclear FMR1 interacting protein 1 Neighboring gene RNA, 7SL, cytoplasmic 49, pseudogene Neighboring gene uncharacterized LOC105370188 Neighboring gene uncharacterized LOC107984596 Neighboring gene Sharpr-MPRA regulatory region 4080

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1704

General protein information

Preferred Names
GPALPP motifs-containing protein 1
Names
lipopolysaccharide specific response-7 protein
lipopolysaccharide-specific response protein 7

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001316951.1NP_001303880.1  GPALPP motifs-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AK292493, AL359706, CF528444, DC333111
    Consensus CDS
    CCDS9394.1
    UniProtKB/Swiss-Prot
    Q8IXQ4
    UniProtKB/TrEMBL
    A0A024RDS7
    Related
    ENSP00000432500.1, ENST00000497558.5
    Conserved Domains (1) summary
    pfam12572
    Location:204332
    DUF3752; Protein of unknown function (DUF3752)
  2. NM_001316952.2NP_001303881.1  GPALPP motifs-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice junction and differs in the 3' UTR compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a.
    Source sequence(s)
    AL138693, AL359706, BC032333, DC333111
    UniProtKB/Swiss-Prot
    Q8IXQ4
    Conserved Domains (1) summary
    pfam12572
    Location:81209
    DUF3752; Protein of unknown function (DUF3752)
  3. NM_018559.5NP_061029.2  GPALPP motifs-containing protein 1 isoform a

    See identical proteins and their annotated locations for NP_061029.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AL359706, BC039586, DC333111
    Consensus CDS
    CCDS9394.1
    UniProtKB/Swiss-Prot
    Q8IXQ4
    UniProtKB/TrEMBL
    A0A024RDS7
    Related
    ENSP00000368447.4, ENST00000379151.9
    Conserved Domains (1) summary
    pfam12572
    Location:204332
    DUF3752; Protein of unknown function (DUF3752)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    44989530..45037669
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005266444.3XP_005266501.1  GPALPP motifs-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_005266501.1

    UniProtKB/Swiss-Prot
    Q8IXQ4
    UniProtKB/TrEMBL
    A0A024RDS7
    Conserved Domains (1) summary
    pfam12572
    Location:204332
    DUF3752; Protein of unknown function (DUF3752)
  2. XM_011535144.2XP_011533446.1  GPALPP motifs-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011533446.1

    Conserved Domains (1) summary
    pfam12572
    Location:81209
    DUF3752; Protein of unknown function (DUF3752)

RNA

  1. XR_001749600.1 RNA Sequence

  2. XR_001749601.2 RNA Sequence

  3. XR_941622.2 RNA Sequence

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