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ARMC1 armadillo repeat containing 1 [ Homo sapiens (human) ]

Gene ID: 55156, updated on 7-Jun-2020

Summary

Official Symbol
ARMC1provided by HGNC
Official Full Name
armadillo repeat containing 1provided by HGNC
Primary source
HGNC:HGNC:17684
See related
Ensembl:ENSG00000104442
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
Arcp
Expression
Ubiquitous expression in brain (RPKM 13.7), endometrium (RPKM 11.5) and 25 other tissues See more
Orthologs

Genomic context

See ARMC1 in Genome Data Viewer
Location:
8q13.1
Exon count:
8
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 8 NC_000008.11 (65602456..65634217, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (66514691..66546452, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase A pseudogene 86 Neighboring gene long intergenic non-protein coding RNA 1299 Neighboring gene mitochondrial fission regulator 1 Neighboring gene uncharacterized LOC107986949 Neighboring gene uncharacterized LOC107986948 Neighboring gene phosphodiesterase 7A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10511

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
metal ion transport IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
armadillo repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286702.1NP_001273631.1  armadillo repeat-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001273631.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an exon in the central coding region compared to variant 1. These differences cause translation initiation at an alternate AUG and result in an isoform (2) with a shorter and distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AA808041, AC055822, AC100814, AK304463, DC349250
    Consensus CDS
    CCDS69490.1
    UniProtKB/Swiss-Prot
    Q9NVT9
    Related
    ENSP00000388572.2, ENST00000458464.3
  2. NM_018120.6NP_060590.1  armadillo repeat-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_060590.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AA808041, AC055822, AC100814, BC018846, DC349250
    Consensus CDS
    CCDS6181.1
    UniProtKB/Swiss-Prot
    Q9NVT9
    Related
    ENSP00000276569.3, ENST00000276569.8
    Conserved Domains (1) summary
    pfam00514
    Location:2767
    Arm; Armadillo/beta-catenin-like repeat

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p13 Primary Assembly

    Range
    65602456..65634217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017013605.2XP_016869094.1  armadillo repeat-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q9NVT9
    Conserved Domains (1) summary
    pfam00514
    Location:2767
    Arm; Armadillo/beta-catenin-like repeat
  2. XM_005251264.2XP_005251321.1  armadillo repeat-containing protein 1 isoform X2

    Conserved Domains (1) summary
    cd00020
    Location:2191
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
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