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TTC38 tetratricopeptide repeat domain 38 [ Homo sapiens (human) ]

Gene ID: 55020, updated on 22-May-2020

Summary

Official Symbol
TTC38provided by HGNC
Official Full Name
tetratricopeptide repeat domain 38provided by HGNC
Primary source
HGNC:HGNC:26082
See related
Ensembl:ENSG00000075234
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LL22NC03-5H6.5
Expression
Broad expression in kidney (RPKM 26.4), small intestine (RPKM 22.0) and 25 other tissues See more
Orthologs

Genomic context

See TTC38 in Genome Data Viewer
Location:
22q13.31
Exon count:
19
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 22 NC_000022.11 (46267966..46294008)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (46663861..46689905)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene cysteine rich DPF motif domain containing 1 Neighboring gene polycystin family receptor for egg jelly Neighboring gene GTSE1 divergent transcript Neighboring gene G2 and S-phase expressed 1 Neighboring gene tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20699

General protein information

Preferred Names
tetratricopeptide repeat protein 38
Names
TPR repeat protein 38

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017931.4NP_060401.3  tetratricopeptide repeat protein 38

    Status: VALIDATED

    Source sequence(s)
    Z93024
    Consensus CDS
    CCDS43030.1
    Related
    ENSP00000370419.3, ENST00000381031.8

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p13 Primary Assembly

    Range
    46267966..46294008
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011530259.1XP_011528561.1  tetratricopeptide repeat protein 38 isoform X1

    Conserved Domains (2) summary
    cd05804
    Location:1358
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    sd00006
    Location:148178
    TPR; TPR repeat [structural motif]
  2. XM_011530260.3XP_011528562.1  tetratricopeptide repeat protein 38 isoform X2

    Related
    ENSP00000410095.1, ENST00000421359.5
    Conserved Domains (1) summary
    cd05804
    Location:60206
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...

RNA

  1. XR_002958710.1 RNA Sequence

  2. XR_001755259.2 RNA Sequence

  3. XR_001755258.2 RNA Sequence

  4. XR_244380.4 RNA Sequence

  5. XR_001755260.2 RNA Sequence

  6. XR_001755257.1 RNA Sequence

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