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FAM174C family with sequence similarity 174 member C [ Homo sapiens (human) ]

Gene ID: 55009, updated on 13-May-2022

Summary

Official Symbol
FAM174Cprovided by HGNC
Official Full Name
family with sequence similarity 174 member Cprovided by HGNC
Primary source
HGNC:HGNC:26073
See related
Ensembl:ENSG00000228300 AllianceGenome:HGNC:26073
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C19orf24
Summary
Located in cytoplasm and extracellular region. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in fat (RPKM 14.6), kidney (RPKM 13.8) and 25 other tissues See more
Orthologs
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Genomic context

See FAM174C in Genome Data Viewer
Location:
19p13.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (1275530..1279228)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (1244053..1247807)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (1275529..1279227)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene IQ motif and SEC7 domain-containing protein 2-like Neighboring gene uncharacterized LOC105372236 Neighboring gene CIRBP antisense RNA 1 Neighboring gene cold inducible RNA binding protein Neighboring gene ephrin A2 Neighboring gene ribosomal protein S15 pseudogene 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20640

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in extracellular region IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_017914.4NP_060384.3  protein FAM174C precursor

    See identical proteins and their annotated locations for NP_060384.3

    Status: VALIDATED

    Source sequence(s)
    BG333480, BM675280, BX402818
    Consensus CDS
    CCDS12060.2
    UniProtKB/Swiss-Prot
    Q9BVV8
    Related
    ENSP00000386557.3, ENST00000409293.6
    Conserved Domains (1) summary
    pfam06679
    Location:26132
    DUF1180; Protein of unknown function (DUF1180)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    1275530..1279228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    1244053..1247807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)