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N-56 probable 2-isopropylmalate synthase [ Glycine max (soybean) ]

Gene ID: 547778, updated on 11-Apr-2024

Summary

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Gene symbol
N-56
Gene description
probable 2-isopropylmalate synthase
Locus tag
GLYMA_13G024700v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
GmN56
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Genomic context

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Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (3686426..3738687)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (4631528..4686477)

Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene probable 2-isopropylmalate synthase Neighboring gene uncharacterized LOC102668702 Neighboring gene uncharacterized LOC102668794 Neighboring gene replication protein A 70 kDa DNA-binding subunit E-like Neighboring gene uncharacterized LOC121173364 Neighboring gene uncharacterized LOC106795595

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GmN56, a novel nodule-specific cDNA from soybean root nodules encodes a protein homologous to isopropylmalate synthase and homocitrate synthase. Kouchi H, et al. Mol Plant Microbe Interact, 1995 Jan-Feb. PMID 7539640

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 2-isopropylmalate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable 2-isopropylmalate synthase
Names
alpha-IPM synthase
alpha-isopropylmalate synthase
late nodulin
late nodulin-56
NP_001237749.1
XP_025980610.1
XP_040863770.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001250820.3 → NP_001237749.1  probable 2-isopropylmalate synthase

    See identical proteins and their annotated locations for NP_001237749.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04004466
    UniProtKB/Swiss-Prot
    Q39891
    Conserved Domains (1) summary
    PLN02321
    Location:5 → 563
    PLN02321; 2-isopropylmalate synthase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    3686426..3738687
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041007836.1 → XP_040863770.1  probable 2-isopropylmalate synthase isoform X2

    UniProtKB/TrEMBL
    A0A0R0GHL3
    Conserved Domains (1) summary
    PLN02321
    Location:5 → 411
    PLN02321; 2-isopropylmalate synthase

  2. XM_026124825.2 → XP_025980610.1  probable 2-isopropylmalate synthase isoform X1

    Conserved Domains (1) summary
    PLN02321
    Location:5 → 535
    PLN02321; 2-isopropylmalate synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39891.1 GenPept UniProtKB/Swiss-Prot:Q39891

Gene LinkOut

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