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PVX_098930 small nuclear ribonucleoprotein (snRNP), putative [ Plasmodium vivax (malaria parasite P. vivax) ]

Gene ID: 5473926, updated on 16-Nov-2023

Summary

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Gene symbol
PVX_098930
Gene description
small nuclear ribonucleoprotein (snRNP), putative
Locus tag
PVX_098930
Gene type
protein coding
RNA name
small nuclear ribonucleoprotein (snRNP), putative
RefSeq status
PROVISIONAL
Organism
Plasmodium vivax (strain: Salvador I)
Lineage
Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Plasmodium)
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Genomic context

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Location:
chromosome: 7
Exon count:
3
Sequence:
Chromosome: 7; NC_009912.1 (367055..367705)

Chromosome 7 - NC_009912.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene DEAD/DEAH box helicase, putative Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009912.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Carlton JM, et al. Nature, 2008 Oct 9. PMID 18843361, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal snRNP assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SMN-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U1 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U5 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of commitment complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pICln-Sm protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small nuclear ribonucleoprotein (snRNP), putative
XP_001614635.1
  • encoded by transcript PVX_098930A

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009912.1 Reference assembly

    Range
    367055..367705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001614585.1 → XP_001614635.1  small nuclear ribonucleoprotein (snRNP), putative [Plasmodium vivax]

    See identical proteins and their annotated locations for XP_001614635.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A0J9SXJ3, A0A0J9TFL8, A0A0J9V5W0, A0A0J9WEF1, A0A1G4GV10, A5K6G7
    Conserved Domains (1) summary
    cd01721
    Location:6 → 75
    Sm_D3; Sm protein D3
Nucleotide Protein
Heading Accession and Version

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