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Rps23rg1 ribosomal protein S23, retrogene 1 [ Mus musculus (house mouse) ]

Gene ID: 546049, updated on 27-Feb-2024

Summary

Official Symbol
Rps23rg1provided by MGI
Official Full Name
ribosomal protein S23, retrogene 1provided by MGI
Primary source
MGI:MGI:3612471
See related
Ensembl:ENSMUSG00000065952 AllianceGenome:MGI:3612471
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rps23r1; 2610027C06Rik; C330021F23Rik
Summary
Enables adenylate cyclase binding activity. Acts upstream of or within amyloid-beta metabolic process; negative regulation of protein metabolic process; and positive regulation of protein kinase A signaling. Is intrinsic component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in liver E14 (RPKM 155.9), CNS E11.5 (RPKM 107.6) and 25 other tissues See more
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Genomic context

Location:
8 A1.1; 8 1.92 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (3617998..3634776)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (3567998..3584776)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene mucolipin 1 Neighboring gene STARR-positive B cell enhancer ABC_E2258 Neighboring gene patatin-like phospholipase domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_20589 Neighboring gene STARR-seq mESC enhancer starr_20590 Neighboring gene STARR-seq mESC enhancer starr_20592 Neighboring gene ribosomal protein S23, pseudogene 2 Neighboring gene calmodulin regulated spectrin-associated protein family, member 3 Neighboring gene STARR-seq mESC enhancer starr_20594 Neighboring gene STARR-positive B cell enhancer ABC_E3766 Neighboring gene XPA binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
ribosomal protein S23, retrogene 1
Names
ribosomal protein S23 like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024728.2NP_001019899.1  ribosomal protein S23, retrogene 1

    See identical proteins and their annotated locations for NP_001019899.1

    Status: PROVISIONAL

    Source sequence(s)
    AK049309
    Consensus CDS
    CCDS52468.1
    UniProtKB/TrEMBL
    F6ZVF2, Q8C7T0
    Related
    ENSMUSP00000123235.2, ENSMUST00000136592.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    3617998..3634776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)