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USP53 ubiquitin specific peptidase 53 [ Homo sapiens (human) ]

Gene ID: 54532, updated on 12-Oct-2019

Summary

Official Symbol
USP53provided by HGNC
Official Full Name
ubiquitin specific peptidase 53provided by HGNC
Primary source
HGNC:HGNC:29255
See related
Ensembl:ENSG00000145390 MIM:617431
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in fat (RPKM 25.2), colon (RPKM 12.3) and 24 other tissues See more
Orthologs

Genomic context

See USP53 in Genome Data Viewer
Location:
4q26
Exon count:
21
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (119212612..119295518)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (120133775..120216673)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379404 Neighboring gene myozenin 2 Neighboring gene uncharacterized LOC101929762 Neighboring gene mitochondrial ribosomal protein L42 pseudogene 1 Neighboring gene chromosome 4 open reading frame 3 Neighboring gene fatty acid binding protein 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp781E1417

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
NOT thiol-dependent ubiquitinyl hydrolase activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
action potential IEA
Inferred from Electronic Annotation
more info
 
biological_process ND
No biological Data available
more info
 
neuron apoptotic process IEA
Inferred from Electronic Annotation
more info
 
protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 
response to auditory stimulus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
sensory perception of sound IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
inactive ubiquitin carboxyl-terminal hydrolase 53
Names
inactive ubiquitin-specific peptidase 53
ubiquitin specific protease 53
ubiquitin specific proteinase 53

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001371395.1NP_001358324.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC092656
    Related
    ENSP00000274030.5, ENST00000274030.10
  2. NM_001371396.1NP_001358325.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC092656
  3. NM_001371397.1NP_001358326.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC092656
  4. NM_001371398.1NP_001358327.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC092656
  5. NM_001371399.1NP_001358328.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC092656
    Related
    ENSP00000409906.1, ENST00000450251.5
  6. NM_019050.2NP_061923.2  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform 1

    See identical proteins and their annotated locations for NP_061923.2

    Status: VALIDATED

    Source sequence(s)
    AB037771, AK022799, BQ019723, BX648339, CD721951, CR749490, DA859085, DA886370
    Consensus CDS
    CCDS43265.1
    UniProtKB/Swiss-Prot
    Q70EK8
    UniProtKB/TrEMBL
    Q9H9I0
    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    119212612..119295518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011532038.2XP_011530340.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X4

    See identical proteins and their annotated locations for XP_011530340.1

    Conserved Domains (1) summary
    cd02257
    Location:3232
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
  2. XM_017008313.1XP_016863802.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X1

    UniProtKB/Swiss-Prot
    Q70EK8
    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
  3. XM_005263077.4XP_005263134.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X5

    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
  4. XM_005263076.3XP_005263133.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X3

    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
  5. XM_005263075.3XP_005263132.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X2

    Conserved Domains (2) summary
    cd02257
    Location:119247
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
  6. XM_006714240.1XP_006714303.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X4

    See identical proteins and their annotated locations for XP_006714303.1

    Conserved Domains (1) summary
    cd02257
    Location:3232
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
  7. XM_017008315.2XP_016863804.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X1

    UniProtKB/Swiss-Prot
    Q70EK8
    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
  8. XM_011532037.2XP_011530339.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X1

    See identical proteins and their annotated locations for XP_011530339.1

    UniProtKB/Swiss-Prot
    Q70EK8
    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
  9. XM_017008314.1XP_016863803.1  inactive ubiquitin carboxyl-terminal hydrolase 53 isoform X1

    UniProtKB/Swiss-Prot
    Q70EK8
    Conserved Domains (3) summary
    cd02257
    Location:119348
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    cl02553
    Location:30175
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:31348
    UCH; Ubiquitin carboxyl-terminal hydrolase
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