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ARMCX6 armadillo repeat containing X-linked 6 [ Homo sapiens (human) ]

Gene ID: 54470, updated on 8-May-2020

Summary

Official Symbol
ARMCX6provided by HGNC
Official Full Name
armadillo repeat containing X-linked 6provided by HGNC
Primary source
HGNC:HGNC:26094
See related
Ensembl:ENSG00000198960 MIM:301048
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
GASP10
Expression
Ubiquitous expression in spleen (RPKM 13.9), endometrium (RPKM 12.8) and 25 other tissues See more
Orthologs

Genomic context

See ARMCX6 in Genome Data Viewer
Location:
Xq22.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (101615118..101618001, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (100870108..100872991, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene armadillo repeat containing X-linked 1 Neighboring gene armadillo repeat containing X-linked 7, pseudogene Neighboring gene armadillo repeat containing X-linked 3 Neighboring gene RNA, U6 small nuclear 30, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ20811

Gene Ontology Provided by GOA

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021313.1 RefSeqGene

    Range
    5002..7877
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001009584.1NP_001009584.1  protein ARMCX6

    See identical proteins and their annotated locations for NP_001009584.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 3. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AI076820, BC007677
    Consensus CDS
    CCDS14488.1
    UniProtKB/Swiss-Prot
    Q7L4S7
    Related
    ENSP00000440648.1, ENST00000538627.5
    Conserved Domains (1) summary
    pfam04826
    Location:123295
    Arm_2; Armadillo-like
  2. NM_001184768.1NP_001171697.1  protein ARMCX6

    See identical proteins and their annotated locations for NP_001171697.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) represents the longest transcript. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AI076820, BC007677, DA933518
    Consensus CDS
    CCDS14488.1
    UniProtKB/Swiss-Prot
    Q7L4S7
    Related
    ENSP00000444537.1, ENST00000539247.5
    Conserved Domains (1) summary
    pfam04826
    Location:123295
    Arm_2; Armadillo-like
  3. NM_019007.4NP_061880.2  protein ARMCX6

    See identical proteins and their annotated locations for NP_061880.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR compared to variant 3. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AI076820, BC007677
    Consensus CDS
    CCDS14488.1
    UniProtKB/Swiss-Prot
    Q7L4S7
    Related
    ENSP00000354708.4, ENST00000361910.9
    Conserved Domains (1) summary
    pfam04826
    Location:123295
    Arm_2; Armadillo-like

RNA

  1. NR_033669.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and lacks most of the coding region compared to variant 1. This variant is not thought to be protein-coding.
    Source sequence(s)
    AI076820, BX423052
    Related
    ENST00000497931.5
  2. NR_033670.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks most of the coding region compared to variant 1. This variant is not thought to be protein-coding.
    Source sequence(s)
    AI076820, AW955663, BC007677, BX423052

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    101615118..101618001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011530976.2XP_011529278.1  protein ARMCX6 isoform X1

    Conserved Domains (1) summary
    pfam04826
    Location:186358
    Arm_2; Armadillo-like
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