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YIPF1 Yip1 domain family member 1 [ Homo sapiens (human) ]

Gene ID: 54432, updated on 24-Nov-2020

Summary

Official Symbol
YIPF1provided by HGNC
Official Full Name
Yip1 domain family member 1provided by HGNC
Primary source
HGNC:HGNC:25231
See related
Ensembl:ENSG00000058799 MIM:617521
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FinGER1; DJ167A19.1
Expression
Ubiquitous expression in thyroid (RPKM 28.9), prostate (RPKM 18.8) and 25 other tissues See more
Orthologs

Genomic context

See YIPF1 in Genome Data Viewer
Location:
1p32.3
Exon count:
12
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (53851733..53889797, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (54317392..54355487, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NDC1 transmembrane nucleoporin Neighboring gene ribosomal protein L37 pseudogene 7 Neighboring gene Sharpr-MPRA regulatory region 3939 Neighboring gene iodothyronine deiodinase 1 Neighboring gene heat shock protein family B (small) member 11

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Genetic polymorphisms of the human PNPLA3 gene are strongly associated with severity of non-alcoholic fatty liver disease in Japanese.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
small GTPase binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Golgi medial cisterna IDA
Inferred from Direct Assay
more info
PubMed 
Golgi trans cisterna IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
late endosome membrane IEA
Inferred from Electronic Annotation
more info
 
trans-Golgi network IDA
Inferred from Direct Assay
more info
PubMed 
transport vesicle IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
protein YIPF1
Names
YIP1 family member 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018982.5NP_061855.1  protein YIPF1

    See identical proteins and their annotated locations for NP_061855.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the protein-coding transcript.
    Source sequence(s)
    AL031427, AL391003, AL596480, BI757212
    Consensus CDS
    CCDS584.1
    UniProtKB/Swiss-Prot
    Q9Y548
    Related
    ENSP00000072644.1, ENST00000072644.7
    Conserved Domains (1) summary
    pfam04893
    Location:86268
    Yip1; Yip1 domain

RNA

  1. NR_036639.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in the 3' end, compared to variant 1, which renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL031427, AL391003, AL596480
  2. NR_036640.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate exon in the 5' end and contains an alternate exon in the 3' end, compared to variant 1, which renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AL031427, AL391003, AL596480
  3. NR_135075.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two consecutive internal exons, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AA405430, AK000823, BI561906, BX405963
    Related
    ENST00000371399.5

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    53851733..53889797 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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