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APS-AA2 acid phosphatase 1-like [ Solanum lycopersicum (tomato) ]

Gene ID: 544190, updated on 9-Nov-2023

Summary

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Gene symbol
APS-AA2
Gene description
acid phosphatase 1-like
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See APS-AA2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 3 NC_015440.3 (56185252..56188414, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 3 NC_015440.2 (54757137..54760299, complement)

Chromosome 3 - NC_015440.3Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 35-like Neighboring gene putative kinase-like protein TMKL1 Neighboring gene uncharacterized protein At3g06530 Neighboring gene WD repeat-containing protein WRAP73

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Acid phosphatase-1 from nematode resistant tomato : isolation and characterization of its gene. Williamson VM, et al. Plant Physiol, 1991 Sep. PMID 16668360, Free PMC Article
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acid phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid phosphatase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328671.1 → NP_001315600.1  acid phosphatase 1-like precursor

    Status: VALIDATED

    Source sequence(s)
    AK324868, X55883
    UniProtKB/TrEMBL
    A0A3Q7FNR0
    Conserved Domains (1) summary
    TIGR01675
    Location:40 → 263
    plant-AP; plant acid phosphatase

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015440.3 Reference SL3.0 Primary Assembly

    Range
    56185252..56188414 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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