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CLB1 putaive calcium-dependent lipid-binding protein [ Solanum lycopersicum (tomato) ]

Gene ID: 543501, updated on 9-Nov-2023

Summary

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Gene symbol
CLB1
Gene description
putaive calcium-dependent lipid-binding protein
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (85473115..85485531, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (85597748..85610129, complement)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene alpha/beta-hydrolases superfamily protein Neighboring gene receptor-like serine/threonine-protein kinase At2g45590 Neighboring gene cucumber peeling cupredoxin Neighboring gene BEACH domain-containing protein C2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A novel gene of tomato preferentially expressed in fruit encodes a protein with a Ca2+-dependent lipid-binding domain. Kiyosue T, et al. Plant Mol Biol, 1997 Dec. PMID 9426616
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CLB1; putaive calcium-dependent lipid-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244901.1 → NP_001231830.1  putaive calcium-dependent lipid-binding protein

    See identical proteins and their annotated locations for NP_001231830.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) has twelve exons.
    Source sequence(s)
    AB001389
    UniProtKB/TrEMBL
    O48645
    Conserved Domains (1) summary
    cl27773
    Location:67 → 362
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  2. NM_001368271.1 → NP_001355200.1  putaive calcium-dependent lipid-binding protein

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has thirteen exons.
    Source sequence(s)
    AEKE03003137, AK326940
    UniProtKB/TrEMBL
    O48645

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    85473115..85485531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010325479.3 → XP_010323781.1  CLB1 isoform X1

    UniProtKB/TrEMBL
    O48645
    Conserved Domains (1) summary
    cl27773
    Location:67 → 362
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  2. XM_010325482.3 → XP_010323784.1  CLB1 isoform X1

    See identical proteins and their annotated locations for XP_010323784.1

    UniProtKB/TrEMBL
    O48645
    Conserved Domains (1) summary
    cl27773
    Location:67 → 362
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain

  3. XM_026032898.1 → XP_025888683.1  CLB1 isoform X1

    UniProtKB/TrEMBL
    O48645
    Conserved Domains (1) summary
    cl27773
    Location:67 → 362
    SMP_LBD; Synaptotagmin-like mitochondrial-lipid-binding domain
Nucleotide Protein
Heading Accession and Version

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