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LOC541984 Ubiquitin carrier protein [ Zea mays ]

Gene ID: 541984, updated on 14-Dec-2023

Summary

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Gene symbol
LOC541984
Gene description
Ubiquitin carrier protein
Locus tag
ZEAMMB73_Zm00001d012421
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
GRMZM2G085600
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Genomic context

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Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 8 NC_050103.1 (175486156..175490097)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 8 NC_024466.2 (174231537..174235457)

Chromosome 8 - NC_050103.1Genomic Context describing neighboring genes Neighboring gene WUSCHEL-related homeobox 5 Neighboring gene heat shock protein 1 Neighboring gene uncharacterized LOC103636514 Neighboring gene transfer RNA arginine (anticodon CCG) Neighboring gene Histone H2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The electronic Plant Gene Register. . Plant Physiol, 1998 Nov. PMID 9890811, Free PMC Article
  2. Gene discovery and annotation using LCM-454 transcriptome sequencing. Emrich SJ, et al. Genome Res, 2007 Jan. PMID 17095711, Free PMC Article
  3. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
  4. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
  5. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Ubiquitin carrier protein; ubiquitin carrier protein
Names
putative ubiquitin-conjugating enzyme family
ubiquitin carrier protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001371618.1 → NP_001358547.1  Ubiquitin carrier protein

    Status: VALIDATED

    Source sequence(s)
    BM266693, DT648249, DW777228
    UniProtKB/TrEMBL
    A0A804NB65, O24560
    Conserved Domains (1) summary
    pfam00179
    Location:12 → 162
    UQ_con; Ubiquitin-conjugating enzyme

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050103.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    175486156..175490097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020542324.3 → XP_020397913.1  ubiquitin carrier protein isoform X2

    UniProtKB/TrEMBL
    B4FZ07, B6SJE0
    Conserved Domains (1) summary
    pfam00179
    Location:12 → 144
    UQ_con; Ubiquitin-conjugating enzyme

  2. XM_008657195.4 → XP_008655417.1  ubiquitin carrier protein isoform X1

    UniProtKB/TrEMBL
    B4FZ07
    Conserved Domains (2) summary
    COG5078
    Location:5 → 145
    COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
    pfam00179
    Location:12 → 146
    UQ_con; Ubiquitin-conjugating enzyme

RNA

  1. XR_004851813.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001111637.1: Suppressed sequence

    Description
    NM_001111637.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

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