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LOC541473 FKBP prolyl isomerase 6 pseudogene [ Homo sapiens (human) ]

Gene ID: 541473, updated on 13-May-2022

Summary

Gene symbol
LOC541473
Gene description
FKBP prolyl isomerase 6 pseudogene
See related
Ensembl:ENSG00000146722
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 24.0), spleen (RPKM 2.2) and 8 other tissues See more
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Genomic context

See LOC541473 in Genome Data Viewer
Location:
7q11.23
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (75391949..75395461, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (76679223..76682735, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (75021223..75024735, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene speedy/RINGO cell cycle regulator family member E15 Neighboring gene PMS1 homolog 2, mismatch repair system component pseudogene 2 Neighboring gene stromal antigen 3-like 1 (pseudogene) Neighboring gene uncharacterized LOC124901677 Neighboring gene tripartite motif containing 73 Neighboring gene uncharacterized LOC124901676 Neighboring gene NSUN5 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003602.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC022013, HY019943, HY214099
    Related
    ENST00000275590.9

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    75391949..75395461 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    76679223..76682735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001013748.1: Suppressed sequence

    Description
    NM_001013748.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.