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LINC00113 long intergenic non-protein coding RNA 113 [ Homo sapiens (human) ]

Gene ID: 54088, updated on 10-Oct-2023

Summary

Official Symbol
LINC00113provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 113provided by HGNC
Primary source
HGNC:HGNC:1264
See related
Ensembl:ENSG00000225298 AllianceGenome:HGNC:1264
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SLERCC; C21orf23; NCRNA00113
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00113 in Genome Data Viewer
Location:
21q21.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (27722379..27751233)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (26085211..26114067)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (29094698..29123552)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene nicastrin pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 1673 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:29390498-29390664 Neighboring gene long intergenic non-protein coding RNA 314 Neighboring gene long intergenic non-protein coding RNA 1697 Neighboring gene long intergenic non-protein coding RNA 1695

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • Specific Low Expression in RCC

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024357.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI261615, AI793052
    Related
    ENST00000411460.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    27722379..27751233
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    26085211..26114067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)