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LINC00158 long intergenic non-protein coding RNA 158 [ Homo sapiens (human) ]

Gene ID: 54072, updated on 23-Nov-2021

Summary

Official Symbol
LINC00158provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 158provided by HGNC
Primary source
HGNC:HGNC:1283
See related
Ensembl:ENSG00000185433
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C21orf42; NCRNA00158
Expression
Biased expression in testis (RPKM 2.2), prostate (RPKM 0.3) and 2 other tissues See more
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Genomic context

See LINC00158 in Genome Data Viewer
Location:
21q21.2
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (25385820..25431701, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (26758133..26804013, complement)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 489 Neighboring gene ribosomal protein L13a pseudogene 7 Neighboring gene cytochrome P450 family 2 subfamily C member 63, pseudogene Neighboring gene uncharacterized LOC105372753

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024027.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA437209, AP000220, AY035383
    Related
    ENST00000332587.8

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    25385820..25431701 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_058184.1: Suppressed sequence

    Description
    NM_058184.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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