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SLCO1C1 solute carrier organic anion transporter family member 1C1 [ Homo sapiens (human) ]

Gene ID: 53919, updated on 22-Sep-2022

Summary

Official Symbol
SLCO1C1provided by HGNC
Official Full Name
solute carrier organic anion transporter family member 1C1provided by HGNC
Primary source
HGNC:HGNC:13819
See related
Ensembl:ENSG00000139155 MIM:613389; AllianceGenome:HGNC:13819
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OATP1; OATPF; OATP-F; OATP14; OATP1C1; OATPRP5; SLC21A14
Summary
This gene encodes a member of the organic anion transporter family. The encoded protein is a transmembrane receptor that mediates the sodium-independent uptake of thyroid hormones in brain tissues. This protein has particularly high affinity for the thyroid hormones thyroxine, tri-iodothyronine and reverse tri-iodothyronine. Polymorphisms in the gene encoding this protein may be associated with fatigue and depression in patients suffering from hyperthyroidism. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2009]
Expression
Biased expression in brain (RPKM 4.0), fat (RPKM 0.5) and 3 other tissues See more
Orthologs
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Genomic context

See SLCO1C1 in Genome Data Viewer
Location:
12p12.2
Exon count:
15
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (20695332..20753386)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (20573918..20631651)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (20848266..20906320)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 3A Neighboring gene ubiquitin conjugating enzyme E2 L2 (pseudogene) Neighboring gene ubiquitin like with PHD and ring finger domains 1 pseudogene Neighboring gene SLCO1B3-SLCO1B7 readthrough Neighboring gene solute carrier organic anion transporter family member 1B3 Neighboring gene putative solute carrier organic anion transporter family member 1B7 Neighboring gene solute carrier organic anion transporter family member 1B1 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Hundreds of variants clustered in genomic loci and biological pathways affect human height.
EBI GWAS Catalog
Investigation of single nucleotide polymorphisms and biological pathways associated with response to TNFα inhibitors in patients with rheumatoid arthritis.
EBI GWAS Catalog
Many sequence variants affecting diversity of adult human height.
EBI GWAS Catalog

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in basolateral plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
solute carrier organic anion transporter family member 1C1
Names
OAT-RP-5
OATP-14
organic anion transporter F
organic anion transporter polypeptide-related protein 5
organic anion transporting polypeptide 14
solute carrier family 21 (organic anion transporter), member 14
solute carrier family 21 member 14
thyroxine transporter

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145944.2NP_001139416.1  solute carrier organic anion transporter family member 1C1 isoform 4

    See identical proteins and their annotated locations for NP_001139416.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (4) has a distinct N-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC092491, AF205076, AF260704, AK294333
    Consensus CDS
    CCDS53759.1
    UniProtKB/Swiss-Prot
    Q9NYB5
    Related
    ENSP00000444527.1, ENST00000545102.1
    Conserved Domains (1) summary
    cl28910
    Location:1461
    MFS; Major Facilitator Superfamily
  2. NM_001145945.2NP_001139417.1  solute carrier organic anion transporter family member 1C1 isoform 3

    See identical proteins and their annotated locations for NP_001139417.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting protein (isoform 3) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC092491, AF260704, AK296236, DA345251
    Consensus CDS
    CCDS53758.1
    UniProtKB/Swiss-Prot
    Q9NYB5
    Related
    ENSP00000438665.1, ENST00000540354.5
    Conserved Domains (1) summary
    cl28910
    Location:42530
    MFS; Major Facilitator Superfamily
  3. NM_001145946.2NP_001139418.1  solute carrier organic anion transporter family member 1C1 isoform 1

    See identical proteins and their annotated locations for NP_001139418.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC092491, AF260704, AK303713, DA345251
    Consensus CDS
    CCDS53757.1
    UniProtKB/Swiss-Prot
    Q9NYB5
    Related
    ENSP00000444149.1, ENST00000545604.5
    Conserved Domains (1) summary
    cd17459
    Location:42579
    MFS_SLCO1C_OATP1C; Solute carrier organic anion transporter 1C subfamily of the Major Facilitator Superfamily of transporters
  4. NM_017435.5NP_059131.1  solute carrier organic anion transporter family member 1C1 isoform 2

    See identical proteins and their annotated locations for NP_059131.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate splice site in the 3' coding region that results in a frameshift, compared to variant 1. The resulting protein (isoform 2) has a distinct C-terminus and is shorter than isoform 1.
    Source sequence(s)
    AC092491, AF205076, AF260704
    Consensus CDS
    CCDS8683.1
    UniProtKB/Swiss-Prot
    Q5JPA4, Q9NYB5
    Related
    ENSP00000266509.2, ENST00000266509.7
    Conserved Domains (1) summary
    cd17459
    Location:42579
    MFS_SLCO1C_OATP1C; Solute carrier organic anion transporter 1C subfamily of the Major Facilitator Superfamily of transporters

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    20695332..20753386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    20573918..20631651
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)