Format

Send to:

Choose Destination

PMS2P1 PMS1 homolog 2, mismatch repair system component pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 5379, updated on 21-Dec-2019

Summary

Official Symbol
PMS2P1provided by HGNC
Official Full Name
PMS1 homolog 2, mismatch repair system component pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:9123
See related
MIM:605038
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PMS3; PMS8; PMSR1; PMSR2; PMS2L1; PMS2L6; PMS2L7; PMS2L8; PMS2L13
Expression
Ubiquitous expression in lymph node (RPKM 11.1), testis (RPKM 10.2) and 25 other tissues See more

Genomic context

See PMS2P1 in Genome Data Viewer
Location:
7q22.1
Exon count:
7
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (100320640..100336307, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (99918263..99933930, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene CASTOR family member 3 Neighboring gene uncharacterized LOC105375427 Neighboring gene uncharacterized LOC105375426 Neighboring gene STAG3L5P-PVRIG2P-PILRB readthrough Neighboring gene speedy/RINGO cell cycle regulator family member E3 Neighboring gene stromal antigen 3-like 5 pseudogene Neighboring gene poliovirus receptor related immunoglobulin domain containing 2, pseudogene Neighboring gene microRNA 6840

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • postmeiotic segregation increased 2 pseudogene 1
  • postmeiotic segregation increased 2-like 1 pseudogene
  • postmeiotic segregation increased 2-like 5
  • postmeiotic segregation increased 2-like 6
  • postmeiotic segregation increased 2-like 7
  • postmeiotic segregation increased 2-like 8

Gene Ontology Provided by GOA

Function Evidence Code Pubs
ATPase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
mismatch repair IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
somatic hypermutation of immunoglobulin genes IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
MutLalpha complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mismatch repair complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003613.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AB017004, DA706474

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    100320640..100336307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_005394.1: Suppressed sequence

    Description
    NM_005394.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Support Center