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BTRC beta-transducin repeat containing E3 ubiquitin protein ligase [ Bos taurus (domestic cattle) ]

Gene ID: 534072, updated on 17-Aug-2024

Summary

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Official Symbol
BTRCprovided by VGNC
Official Full Name
beta-transducin repeat containing E3 ubiquitin protein ligaseprovided by VGNC
Primary source
VGNC:VGNC:26603
See related
BGD:BT11106; Ensembl:ENSBTAG00000007476
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 26
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (22130099..22305819)

Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene ladybird homeobox 1 Neighboring gene uncharacterized LOC100847491 Neighboring gene large ribosomal subunit protein uL6-like Neighboring gene DNA polymerase lambda Neighboring gene deleted in primary ciliary dyskinesia homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142684

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box/WD repeat-containing protein 1A
Names
beta-transducin repeat containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001083475.2 → NP_001076944.1  F-box/WD repeat-containing protein 1A

    See identical proteins and their annotated locations for NP_001076944.1

    Status: PROVISIONAL

    Source sequence(s)
    BC123621
    UniProtKB/TrEMBL
    A0AAA9T848, A4FV19
    Related
    ENSBTAP00000102648.1, ENSBTAT00000133090.1
    Conserved Domains (5) summary
    COG2319
    Location:254 → 550
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:267 → 545
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:103 → 141
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:145 → 192
    F-box-like; F-box-like
    sd00039
    Location:270 → 305
    7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    22130099..22305819
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005225560.5 → XP_005225617.4  F-box/WD repeat-containing protein 1A isoform X1

    UniProtKB/TrEMBL
    A0AAA9RWA8
    Related
    ENSBTAP00000075357.1, ENSBTAT00000095797.1

  2. XM_005225561.4 → XP_005225618.4  F-box/WD repeat-containing protein 1A isoform X2

    UniProtKB/TrEMBL
    A0AAA9SNX3
    Related
    ENSBTAP00000085597.1, ENSBTAT00000125503.1

  3. XM_005225565.4 → XP_005225622.4  F-box/WD repeat-containing protein 1A isoform X5

    UniProtKB/TrEMBL
    A0AAA9T848, F1MVN1
    Related
    ENSBTAP00000009830.5, ENSBTAT00000009830.6

  4. XM_010819906.3 → XP_010818208.3  F-box/WD repeat-containing protein 1A isoform X8

    UniProtKB/TrEMBL
    A0AAA9T848

  5. XM_005225564.4 → XP_005225621.4  F-box/WD repeat-containing protein 1A isoform X4

    UniProtKB/TrEMBL
    A0AAA9S175
    Related
    ENSBTAP00000079621.1, ENSBTAT00000108108.1

  6. XM_005225569.4 → XP_005225626.4  F-box/WD repeat-containing protein 1A isoform X7

    UniProtKB/TrEMBL
    A0AAA9T848

  7. XM_005225572.4 → XP_005225629.4  F-box/WD repeat-containing protein 1A isoform X10

    UniProtKB/TrEMBL
    A0AAA9T848
    Related
    ENSBTAP00000074810.1, ENSBTAT00000105785.1

  8. XM_059881904.1 → XP_059737887.1  F-box/WD repeat-containing protein 1A isoform X6

    UniProtKB/TrEMBL
    A0AAA9S175

  9. XM_024985710.2 → XP_024841478.1  F-box/WD repeat-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0AAA9T848
    Conserved Domains (4) summary
    cd00200
    Location:306 → 584
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:309 → 344
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:142 → 180
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:184 → 231
    F-box-like

  10. XM_024985712.2 → XP_024841480.1  F-box/WD repeat-containing protein 1A isoform X9

    UniProtKB/TrEMBL
    A0AAA9SGT5, A0AAA9T848
    Related
    ENSBTAP00000085401.1, ENSBTAT00000126054.1
    Conserved Domains (4) summary
    cd00200
    Location:259 → 537
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:262 → 297
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:95 → 133
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:137 → 184
    F-box-like; F-box-like

  11. XM_024985711.2 → XP_024841479.1  F-box/WD repeat-containing protein 1A isoform X6

    UniProtKB/TrEMBL
    A0AAA9S175
    Conserved Domains (4) summary
    cd00200
    Location:285 → 563
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:288 → 323
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:121 → 159
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:163 → 210
    F-box-like

  12. XM_059881903.1 → XP_059737886.1  F-box/WD repeat-containing protein 1A isoform X3

    UniProtKB/TrEMBL
    A0AAA9T848

  13. XM_059881905.1 → XP_059737888.1  F-box/WD repeat-containing protein 1A isoform X11

    UniProtKB/TrEMBL
    A0AAA9T848
Nucleotide Protein Strain
Heading Accession and Version

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