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CPXCR1 CPX chromosome region candidate 1 [ Homo sapiens (human) ]

Gene ID: 53336, updated on 9-Sep-2022

Summary

Official Symbol
CPXCR1provided by HGNC
Official Full Name
CPX chromosome region candidate 1provided by HGNC
Primary source
HGNC:HGNC:2332
See related
Ensembl:ENSG00000147183 MIM:301055; AllianceGenome:HGNC:2332
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT77
Summary
This gene is one of several genes identified in a region of the X chromosome associated with an X-linked cleft palate (CPX) disorder. The encoded protein contains a motif similar to a motif found in zinc-finger proteins. Mutation analysis of this gene has not revealed any mutation which causes the CPX disorder. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Sep 2011]
Expression
Restricted expression toward testis (RPKM 3.8) See more
Orthologs
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Genomic context

See CPXCR1 in Genome Data Viewer
Location:
Xq21.31
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (88747225..88754781)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (87173865..87181413)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (88002226..88009782)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA ACA64 Neighboring gene uncharacterized LOC107985713 Neighboring gene Sharpr-MPRA regulatory region 3371 Neighboring gene uncharacterized LOC107985653

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
CPX chromosomal region candidate gene 1 protein
Names
cancer/testis antigen 77

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021312.2 RefSeqGene

    Range
    5002..12558
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184771.2NP_001171700.2  CPX chromosomal region candidate gene 1 protein

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL031116
    Consensus CDS
    CCDS14458.1
    UniProtKB/Swiss-Prot
    Q96RS3
    Related
    ENSP00000362203.1, ENST00000373111.5
  2. NM_033048.6NP_149037.5  CPX chromosomal region candidate gene 1 protein

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AL031116
    Consensus CDS
    CCDS14458.1
    UniProtKB/Swiss-Prot
    Q96RS3
    Related
    ENSP00000276127.4, ENST00000276127.9

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    88747225..88754781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    87173865..87181413
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)