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CPXCR1 CPX chromosome region, candidate 1 [ Homo sapiens (human) ]

Gene ID: 53336, updated on 18-Mar-2017
Official Symbol
CPXCR1provided by HGNC
Official Full Name
CPX chromosome region, candidate 1provided by HGNC
Primary source
HGNC:HGNC:2332
See related
Ensembl:ENSG00000147183 Vega:OTTHUMG00000021950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT77
Summary
This gene is one of several genes identified in a region of the X chromosome associated with an X-linked cleft palate (CPX) disorder. The encoded protein contains a motif similar to a motif found in zinc-finger proteins. Mutation analysis of this gene has not revealed any mutation which causes the CPX disorder. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Sep 2011]
Orthologs
Location:
Xq21.31
Exon count:
3
Annotation release Status Assembly Chr Location
108 current GRCh38.p7 (GCF_000001405.33) X NC_000023.11 (88747225..88754785)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (88002226..88009786)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene capping actin protein of muscle Z-line alpha subunit 1 pseudogene Neighboring gene uncharacterized LOC107985713 Neighboring gene uncharacterized LOC107985653 Neighboring gene sorcin pseudogene 2

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
CPX chromosomal region candidate gene 1 protein
Names
cancer/testis antigen 77

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021312.1 RefSeqGene

    Range
    5001..12561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001184771.1NP_001171700.1  CPX chromosomal region candidate gene 1 protein

    See identical proteins and their annotated locations for NP_001171700.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AF284767, AK098646, BU570042
    Consensus CDS
    CCDS14458.1
    UniProtKB/Swiss-Prot
    Q8N123
    Related
    ENSP00000362203, OTTHUMP00000023635, ENST00000373111, OTTHUMT00000057419
  2. NM_033048.5NP_149037.4  CPX chromosomal region candidate gene 1 protein

    See identical proteins and their annotated locations for NP_149037.4

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AF284767, BU570042
    Consensus CDS
    CCDS14458.1
    UniProtKB/Swiss-Prot
    Q8N123
    Related
    ENSP00000276127, OTTHUMP00000023634, ENST00000276127, OTTHUMT00000057418

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p7 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p7 Primary Assembly

    Range
    88747225..88754785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018934.2 Alternate CHM1_1.1

    Range
    87894934..87902486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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