U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CCDC40 coiled-coil domain containing 40 [ Bos taurus (domestic cattle) ]

Gene ID: 529788, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
CCDC40provided by VGNC
Official Full Name
coiled-coil domain containing 40provided by VGNC
Primary source
VGNC:VGNC:26895
See related
BGD:BT13069; Ensembl:ENSBTAG00000016017
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 19
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (52500282..52544577, complement)

Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4A3 Neighboring gene ATP synthase membrane subunit K, mitochondrial Neighboring gene alpha glucosidase Neighboring gene TBC1 domain family member 16 Neighboring gene uncharacterized LOC101907247 Neighboring gene chromobox 4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cilium movement involved in determination of left/right asymmetry IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
coiled-coil domain-containing protein 40

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    52500282..52544577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059878348.1 → XP_059734331.1  coiled-coil domain-containing protein 40 isoform X1

    UniProtKB/TrEMBL
    E1BAJ3

  2. XM_005221283.5 → XP_005221340.1  coiled-coil domain-containing protein 40 isoform X1

    See identical proteins and their annotated locations for XP_005221340.1

    UniProtKB/TrEMBL
    E1BAJ3
    Related
    ENSBTAP00000021324.5, ENSBTAT00000021324.6
    Conserved Domains (2) summary
    TIGR02168
    Location:272 → 1061
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:764 → 862
    BRE1; BRE1 E3 ubiquitin ligase

  3. XM_010816576.3 → XP_010814878.1  coiled-coil domain-containing protein 40 isoform X1

    See identical proteins and their annotated locations for XP_010814878.1

    UniProtKB/TrEMBL
    E1BAJ3
    Conserved Domains (2) summary
    TIGR02168
    Location:272 → 1061
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08647
    Location:764 → 862
    BRE1; BRE1 E3 ubiquitin ligase

  4. XM_059878349.1 → XP_059734332.1  coiled-coil domain-containing protein 40 isoform X2

  5. XM_059878350.1 → XP_059734333.1  coiled-coil domain-containing protein 40 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials