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COL11A2 collagen type XI alpha 2 chain [ Bos taurus (cattle) ]

Gene ID: 515435, updated on 6-Jun-2024

Summary

Official Symbol
COL11A2provided by VGNC
Official Full Name
collagen type XI alpha 2 chainprovided by VGNC
Primary source
VGNC:VGNC:27554
See related
Ensembl:ENSBTAG00000000601
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See COL11A2 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
67
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (7349362..7378844, complement)

Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene bromodomain containing 2 Neighboring gene major histocompatibility complex, class II, DO alpha Neighboring gene uncharacterized LOC132343598 Neighboring gene retinoid X receptor beta Neighboring gene solute carrier family 39 member 7

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

General protein information

Preferred Names
collagen alpha-2(XI) chain
Names
collagen, type XI, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001046199.1NP_001039664.1  collagen alpha-2(XI) chain precursor

    See identical proteins and their annotated locations for NP_001039664.1

    Status: PROVISIONAL

    Source sequence(s)
    AY957499
    UniProtKB/Swiss-Prot
    Q32S24
    UniProtKB/TrEMBL
    F1MRP6
    Related
    ENSBTAP00000000793.5, ENSBTAT00000000793.7
    Conserved Domains (3) summary
    pfam01391
    Location:654710
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15401735
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    7349362..7378844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024983579.2XP_024839347.1  collagen alpha-2(XI) chain isoform X1

    UniProtKB/TrEMBL
    F1MRP6
    Conserved Domains (4) summary
    pfam01391
    Location:712768
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15981793
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    cl26386
    Location:296662
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
  2. XM_005223247.5XP_005223304.1  collagen alpha-2(XI) chain isoform X8

    UniProtKB/TrEMBL
    A0AAA9U0X2, F1MRP6
    Related
    ENSBTAP00000102784.1, ENSBTAT00000104382.1
    Conserved Domains (3) summary
    pfam01391
    Location:547603
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14331628
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
  3. XM_005223246.5XP_005223303.1  collagen alpha-2(XI) chain isoform X7

    UniProtKB/TrEMBL
    A0AAA9TJC4, F1MRP6
    Related
    ENSBTAP00000098425.1, ENSBTAT00000093929.1
    Conserved Domains (3) summary
    pfam01391
    Location:568624
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14541649
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
  4. XM_010818042.4XP_010816344.1  collagen alpha-2(XI) chain isoform X4

    UniProtKB/TrEMBL
    A0AAA9RZS5, F1MRP6
    Related
    ENSBTAP00000075315.1, ENSBTAT00000122125.1
    Conserved Domains (3) summary
    pfam01391
    Location:628684
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15141709
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
  5. XM_010818041.4XP_010816343.1  collagen alpha-2(XI) chain isoform X3

    UniProtKB/TrEMBL
    F1MRP6
    Conserved Domains (3) summary
    pfam01391
    Location:631687
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15171712
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
  6. XM_024983580.2XP_024839348.1  collagen alpha-2(XI) chain isoform X2

    UniProtKB/TrEMBL
    F1MRP6
    Conserved Domains (4) summary
    pfam01391
    Location:652708
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:15381733
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
    cl26386
    Location:236602
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
  7. XM_024983581.2XP_024839349.1  collagen alpha-2(XI) chain isoform X6

    UniProtKB/TrEMBL
    F1MRP6
    Conserved Domains (3) summary
    pfam01391
    Location:573629
    Collagen; Collagen triple helix repeat (20 copies)
    smart00038
    Location:14591654
    COLFI; Fibrillar collagens C-terminal domain
    smart00210
    Location:31213
    TSPN; Thrombospondin N-terminal -like domains
  8. XM_059880333.1XP_059736316.1  collagen alpha-2(XI) chain isoform X5

    UniProtKB/TrEMBL
    F1MRP6