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CTDSPL2 CTD small phosphatase like 2 [ Homo sapiens (human) ]

Gene ID: 51496, updated on 3-Jun-2018
Official Symbol
CTDSPL2provided by HGNC
Official Full Name
CTD small phosphatase like 2provided by HGNC
Primary source
HGNC:HGNC:26936
See related
Ensembl:ENSG00000137770 Vega:OTTHUMG00000131159
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSPC058; HSPC129
Expression
Ubiquitous expression in lymph node (RPKM 7.7), testis (RPKM 7.5) and 25 other tissues See more
Orthologs
See CTDSPL2 in Genome Data Viewer
Location:
15q15.3-q21.1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 15 NC_000015.10 (44427329..44527774)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (44719579..44819455)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene FERM domain containing 5 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 55 Neighboring gene cancer susceptibility 4 Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 43 Neighboring gene heterogeneous nuclear ribonucleoprotein M pseudogene 1 Neighboring gene EIF3J divergent transcript Neighboring gene eukaryotic translation initiation factor 3 subunit J Neighboring gene SPG11, spatacsin vesicle trafficking associated

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • FLJ10523

Gene Ontology Provided by GOA

Function Evidence Code Pubs
phosphoprotein phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
negative regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 
positive regulation of protein export from nucleus IEA
Inferred from Electronic Annotation
more info
 
protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleoplasm IDA
Inferred from Direct Assay
more info
 
Preferred Names
CTD small phosphatase-like protein 2
Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
CTDSP-like 2
NP_057480.2
XP_005254498.1
XP_006720628.1
XP_011519967.1
XP_016877795.1
XP_016877796.1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016396.2NP_057480.2  CTD small phosphatase-like protein 2

    See identical proteins and their annotated locations for NP_057480.2

    Status: VALIDATED

    Source sequence(s)
    AC009996, AF161478, BC035744, DA995235
    Consensus CDS
    CCDS10110.1
    UniProtKB/Swiss-Prot
    Q05D32
    UniProtKB/TrEMBL
    A0A024R5Q8
    Related
    ENSP00000260327.4, OTTHUMP00000161810, ENST00000260327.8, OTTHUMT00000253851
    Conserved Domains (1) summary
    TIGR02251
    Location:287448
    HIF-SF_euk; Dullard-like phosphatase domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p12 Primary Assembly

    Range
    44427329..44527774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011521665.2XP_011519967.1  CTD small phosphatase-like protein 2 isoform X2

    Conserved Domains (1) summary
    TIGR02251
    Location:286447
    HIF-SF_euk; Dullard-like phosphatase domain
  2. XM_017022306.2XP_016877795.1  CTD small phosphatase-like protein 2 isoform X2

    Conserved Domains (1) summary
    TIGR02251
    Location:286447
    HIF-SF_euk; Dullard-like phosphatase domain
  3. XM_017022307.1XP_016877796.1  CTD small phosphatase-like protein 2 isoform X3

    Conserved Domains (1) summary
    cl21460
    Location:287323
    HAD_like; Haloacid Dehalogenase-like Hydrolases
  4. XM_006720565.2XP_006720628.1  CTD small phosphatase-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006720628.1

    UniProtKB/Swiss-Prot
    Q05D32
    UniProtKB/TrEMBL
    A0A024R5Q8
    Conserved Domains (1) summary
    TIGR02251
    Location:287448
    HIF-SF_euk; Dullard-like phosphatase domain
  5. XM_005254441.2XP_005254498.1  CTD small phosphatase-like protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005254498.1

    UniProtKB/Swiss-Prot
    Q05D32
    UniProtKB/TrEMBL
    A0A024R5Q8
    Related
    ENSP00000452837.1, OTTHUMP00000246991, ENST00000558966.5, OTTHUMT00000415524
    Conserved Domains (1) summary
    TIGR02251
    Location:287448
    HIF-SF_euk; Dullard-like phosphatase domain

RNA

  1. XR_001751309.1 RNA Sequence

  2. XR_001751310.1 RNA Sequence

  3. XR_001751306.1 RNA Sequence

  4. XR_001751307.1 RNA Sequence

  5. XR_001751311.1 RNA Sequence

  6. XR_001751312.1 RNA Sequence

  7. XR_001751308.1 RNA Sequence

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