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TTTY1 testis expressed transcript, Y-linked 1 [ Homo sapiens (human) ]

Gene ID: 50858, updated on 17-Sep-2024

Summary

Official Symbol
TTTY1provided by HGNC
Official Full Name
testis expressed transcript, Y-linked 1provided by HGNC
Primary source
HGNC:HGNC:14022
See related
Ensembl:ENSG00000129845 AllianceGenome:HGNC:14022
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTY1; LINC00033; NCRNA00033
Expression
Low expression observed in reference dataset See more
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Genomic context

See TTTY1 in Genome Data Viewer
Location:
Yp11.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (9753156..9774319, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (10061870..10083035, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (9590765..9611928, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis expressed transcript, Y-linked 7B Neighboring gene testis expressed transcript, Y-linked 21 Neighboring gene testis expressed transcript, Y-linked 2 Neighboring gene uncharacterized LOC107987342 Neighboring gene testis expressed transcript, Y-linked 22

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 33
  • testis-specific testis transcript Y 1
  • testis-specific transcript, Y-linked 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001538.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC017019, AF000990, DB035198
    Related
    ENST00000250805.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    9753156..9774319 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    10061870..10083035 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)