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DUXAP10 double homeobox A pseudogene 10 [ Homo sapiens (human) ]

Gene ID: 503639, updated on 10-Dec-2024

Summary

Official Symbol
DUXAP10provided by HGNC
Official Full Name
double homeobox A pseudogene 10provided by HGNC
Primary source
HGNC:HGNC:32189
See related
Ensembl:ENSG00000292986 AllianceGenome:HGNC:32189
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LNMAT1
Summary
Homeobox genes encode DNA-binding proteins, many of which are thought to be involved in early embryonic development. Homeobox genes encode a DNA-binding domain of 60 to 63 amino acids referred to as the homeodomain. This pseudogene is a member of the DUXA homeobox gene family. [provided by RefSeq, Jul 2008]
Expression
Biased expression in prostate (RPKM 13.8), testis (RPKM 6.4) and 9 other tissues See more
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Genomic context

See DUXAP10 in Genome Data Viewer
Location:
14q11.2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (19294785..19337674, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (13607901..13650767, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (19650032..19692921)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene LINC01297-DUXAP10-NBEAP6 readthrough Neighboring gene uncharacterized LOC100420097 Neighboring gene neurobeachin pseudogene 6 Neighboring gene TOMM40 pseudogene 1 Neighboring gene BMS1 pseudogene 17 Neighboring gene MPRA-validated peak2108 silencer Neighboring gene long intergenic non-protein coding RNA 1297 Neighboring gene GRAM domain containing 4 pseudogene 3 Neighboring gene uncharacterized LOC101929572 Neighboring gene POTE ankyrin domain family member G Neighboring gene RNA, U6 small nuclear 1268, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_110526.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK022914, AL589743, AL929602
    Related
    ENST00000748106.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    19294785..19337674 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    13607901..13650767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_004838.6: Suppressed sequence

    Description
    NG_004838.6: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
  2. NM_001013701.1: Suppressed sequence

    Description
    NM_001013701.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.