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OSTLU_13495 hypothetical protein [ Ostreococcus lucimarinus CCE9901 ]

Gene ID: 5006833, updated on 21-Dec-2023

Summary

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Gene symbol
OSTLU_13495
Gene description
hypothetical protein
Locus tag
OSTLU_13495
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Ostreococcus lucimarinus CCE9901 (strain: CCE9901)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
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Genomic context

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Location:
chromosome: 20
Exon count:
1
Sequence:
Chromosome: 20; NC_009374.1 (524017..524778)

Chromosome 20 - NC_009374.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009374.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Palenik B, et al. Proc Natl Acad Sci U S A, 2007 May 1. PMID 17460045, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_009374.1 Reference assembly

    Range
    524017..524778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001422581.1 → XP_001422618.1  predicted protein [Ostreococcus lucimarinus CCE9901]

    See identical proteins and their annotated locations for XP_001422618.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A7R9XR92, A4SBH4
    Conserved Domains (3) summary
    smart00451
    Location:54 → 84
    ZnF_U1; U1-like zinc finger
    COG5246
    Location:10 → 216
    PRP11; Splicing factor 3a, subunit 2 [RNA processing and modification]
    pfam16835
    Location:131 → 210
    SF3A2; Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)
Nucleotide Protein
Heading Accession and Version

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