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glb1l galactosidase beta 1 like [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496447, updated on 17-Aug-2024

Summary

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Official Symbol
glb1lprovided by Xenbase
Official Full Name
galactosidase beta 1 likeprovided by Xenbase
Primary source
Xenbase:XB-GENE-964696
See related
Ensembl:ENSXETG00000019291
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
glb1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
16
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (83934434..83948750)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (78602517..78615427)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101734584 Neighboring gene tubulin alpha 4b Neighboring gene serine/threonine kinase 16 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables beta-galactosidase activity IEA
Inferred from Electronic Annotation
more info
  
enables hydrolase activity, acting on glycosyl bonds IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
beta-galactosidase-1-like protein
Names
beta-galactosidase
NP_001011038.1
XP_031748474.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011038.1 → NP_001011038.1  beta-galactosidase-1-like protein precursor

    See identical proteins and their annotated locations for NP_001011038.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084140
    UniProtKB/TrEMBL
    A0A6I8QGX6, F7A9H0, Q5XHB8
    Related
    ENSXETP00000067798.2, ENSXETT00000076663.2
    Conserved Domains (2) summary
    pfam01301
    Location:33 → 349
    Glyco_hydro_35; Glycosyl hydrolases family 35
    pfam13364
    Location:529 → 601
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    83934434..83948750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031892614.1 → XP_031748474.1  beta-galactosidase-1-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8J1IS89, F7A9H0
    Related
    ENSXETP00000041792.5, ENSXETT00000041792.5
    Conserved Domains (2) summary
    pfam13364
    Location:443 → 515
    BetaGal_dom4_5; Beta-galactosidase jelly roll domain
    cl38930
    Location:2 → 263
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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