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FBXO47 F-box protein 47 [ Homo sapiens (human) ]

Gene ID: 494188, updated on 23-Nov-2021

Summary

Official Symbol
FBXO47provided by HGNC
Official Full Name
F-box protein 47provided by HGNC
Primary source
HGNC:HGNC:31969
See related
Ensembl:ENSG00000204952 MIM:609498
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 2.5) See more
Orthologs
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Genomic context

See FBXO47 in Genome Data Viewer
Location:
17q12; 17q12
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (38936278..38967476, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37092685..37123656, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene LIM and SH3 protein 1 Neighboring gene microRNA 6779 Neighboring gene long intergenic non-protein coding RNA 672 Neighboring gene uncharacterized LOC105371767 Neighboring gene long intergenic non-protein coding RNA 2079 Neighboring gene leucine rich repeat containing 37 member A11, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001008777.3NP_001008777.2  F-box only protein 47

    See identical proteins and their annotated locations for NP_001008777.2

    Status: VALIDATED

    Source sequence(s)
    AC006441, AY700575, BC140879, DB340247
    Consensus CDS
    CCDS32639.1
    UniProtKB/Swiss-Prot
    Q5MNV8
    Related
    ENSP00000367319.2, ENST00000378079.3

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    38936278..38967476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011524866.3XP_011523168.1  F-box only protein 47 isoform X2

  2. XM_011524865.2XP_011523167.1  F-box only protein 47 isoform X1

  3. XM_011524867.2XP_011523169.1  F-box only protein 47 isoform X3

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