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LOC4800541 ankyrin repeat and SAM domain-containing protein 1A [ Drosophila pseudoobscura ]

Gene ID: 4800541, updated on 10-May-2024

Summary

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Gene symbol
LOC4800541
Gene description
ankyrin repeat and SAM domain-containing protein 1A
See related
EnsemblRapid:LOC4800541
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila pseudoobscura
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Orthologs
fruit fly all
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Genomic context

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See LOC4800541 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current UCI_Dpse_MV25 (GCF_009870125.1) 2 NC_046679.1 (2944411..2954027, complement)

Chromosome 2 - NC_046679.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117183303 Neighboring gene uncharacterized LOC26533556 Neighboring gene tissue factor pathway inhibitor Neighboring gene allergen Tab y 5.0101

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_046679.1 Chromosome 2 Reference UCI_Dpse_MV25 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ankyrin repeat and SAM domain-containing protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCI_Dpse_MV25 Primary Assembly

Genomic

  1. NC_046679.1 Reference UCI_Dpse_MV25 Primary Assembly

    Range
    2944411..2954027 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002136965.4 → XP_002137001.3  ankyrin repeat and SAM domain-containing protein 1A

    UniProtKB/TrEMBL
    A0A6I8V253
    Related
    XP_002137001.3, XM_002136965.4
    Conserved Domains (5) summary
    PHA03095
    Location:36 → 272
    PHA03095; ankyrin-like protein; Provisional
    cd01274
    Location:1180 → 1323
    PTB_Anks; Ankyrin repeat and sterile alpha motif (SAM) domain-containing (Anks) protein family Phosphotyrosine-binding (PTB) domain
    sd00045
    Location:49 → 79
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:53 → 148
    Ank_2; Ankyrin repeats (3 copies)
    cl15755
    Location:1019 → 1083
    SAM_superfamily; SAM (Sterile alpha motif )
Nucleotide Protein Strain
Heading Accession and Version

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