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TVAGG3_0160080 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [ Trichomonas vaginalis G3 ]

Gene ID: 4757737, updated on 17-May-2024

Summary

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Gene symbol
TVAGG3_0160080
Gene description
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Locus tag
TVAGG3_0160080
See related
TrichDB:TVAGG3_0160080; VEuPathDB:TVAGG3_0160080
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trichomonas vaginalis G3 (strain: G3, nat-host: Homo sapiens, culture-collection: ATCC:PRA-98)
Lineage
Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas
Old locus tag
TVAG_2v0160080
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Genomic context

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See TVAGG3_0160080 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
1
Sequence:
Chromosome: IV; NC_067206.1 (24462413..24463276, complement)

Chromosome IV - NC_067206.1Genomic Context describing neighboring genes Neighboring gene protein ubiquitination Neighboring gene hypothetical protein Neighboring gene SAP domain family Neighboring gene regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067206.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Carlton JM, et al. Science, 2007 Jan 12. PMID 17218520, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
XP_001312847.1
  • Deepfry function prediction from predicted structure:nucleic acid binding protein;eggNOG seed ortholog:5722.XP_001312847.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_067206.1 Reference assembly

    Range
    24462413..24463276 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001312846.1 → XP_001312847.1  maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) [Trichomonas vaginalis G3]

    See identical proteins and their annotated locations for XP_001312847.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A2F592
    Conserved Domains (1) summary
    TIGR01310
    Location:15 → 239
    uL30_euk; 60S ribosomal protein uL30, eukaryotic form
Nucleotide Protein
Heading Accession and Version

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