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TTTY4C testis expressed transcript, Y-linked 4C [ Homo sapiens (human) ]

Gene ID: 474150, updated on 17-Sep-2024

Summary

Official Symbol
TTTY4Cprovided by HGNC
Official Full Name
testis expressed transcript, Y-linked 4Cprovided by HGNC
Primary source
HGNC:HGNC:31892
See related
Ensembl:ENSG00000228296 AllianceGenome:HGNC:31892
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC00125; NCRNA00125
Summary
There are three copies of this gene on chromosome Y. This record represents the most telomeric copy, which is within the P1 palindrome. [provided by RefSeq, Jul 2008]
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Genomic context

See TTTY4C in Genome Data Viewer
Location:
Yq11.23
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) Y NC_000024.10 (25063083..25099892, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) Y NC_060948.1 (25875479..25912299, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (27209230..27246039, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 736 pseudogene 5, Y-linked Neighboring gene basic charge Y-linked 2C Neighboring gene zinc finger protein 736 pseudogene 4, Y-linked Neighboring gene tripartite motif containing 60 pseudogene 12, Y-linked

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • long intergenic non-protein coding RNA 125
  • testis-specific transcript, Y-linked 4, telomeric
  • testis-specific transcript, Y-linked 4C (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002177.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016728
    Related
    ENST00000456123.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p14 Primary Assembly

    Range
    25063083..25099892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060948.1 Alternate T2T-CHM13v2.0

    Range
    25875479..25912299 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)