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IRF5 interferon regulatory factor 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 472512, updated on 17-Aug-2024

Summary

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Official Symbol
IRF5provided by VGNC
Official Full Name
interferon regulatory factor 5provided by VGNC
Primary source
VGNC:VGNC:4405
Locus tag
CK820_G0013755
See related
Ensembl:ENSPTRG00000019675
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 6 NC_072404.2 (144297374..144309797)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 7 NC_072405.1 (138364915..138376679)

Chromosome 6 - NC_072404.2Genomic Context describing neighboring genes Neighboring gene kielin cysteine rich BMP regulator Neighboring gene filamin-C-like Neighboring gene transportin 3 Neighboring gene ornithine decarboxylase-like Neighboring gene triosephosphate isomerase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072404.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    144297374..144309797
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063815582.1 → XP_063671652.1  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  2. XM_063815579.1 → XP_063671649.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  3. XM_063815585.1 → XP_063671655.1  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  4. XM_016958141.4 → XP_016813630.3  interferon regulatory factor 5 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SAU9

  5. XM_063815576.1 → XP_063671646.1  interferon regulatory factor 5 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SAU9

  6. XM_001154747.8 → XP_001154747.3  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  7. XM_001154689.8 → XP_001154689.3  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  8. XM_009454184.5 → XP_009452459.3  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  9. XM_001154220.7 → XP_001154220.3  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  10. XM_063815586.1 → XP_063671656.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  11. XM_063815584.1 → XP_063671654.1  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  12. XM_063815578.1 → XP_063671648.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  13. XM_063815583.1 → XP_063671653.1  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  14. XM_063815581.1 → XP_063671651.1  interferon regulatory factor 5 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2J8QT50, A0A6D2WE13, H2QVC4

  15. XM_063815577.1 → XP_063671647.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4

  16. XM_063815580.1 → XP_063671650.1  interferon regulatory factor 5 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SAU9, A0A2I3SHG0, A0A2J8QT42, A0A6D2WVC4
Nucleotide Protein
Heading Accession and Version

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