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NR2F1 nuclear receptor subfamily 2 group F member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461753, updated on 17-Aug-2024

Summary

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Official Symbol
NR2F1provided by VGNC
Official Full Name
nuclear receptor subfamily 2 group F member 1provided by VGNC
Primary source
VGNC:VGNC:4103
Locus tag
CK820_G0009180
See related
Ensembl:ENSPTRG00000017073
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See NR2F1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 4 NC_072402.2 (22541584..22552976, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 5 NC_072403.1 (22963507..22975095, complement)

Chromosome 4 - NC_072402.2Genomic Context describing neighboring genes Neighboring gene ARB2 cotranscriptional regulator A Neighboring gene nucleophosmin-like Neighboring gene POU domain class 5, transcription factor 2 Neighboring gene uncharacterized LOC737467 Neighboring gene DNA polymerase delta subunit 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
COUP transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072402.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    22541584..22552976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_517657.9 → XP_517657.3  COUP transcription factor 1 isoform X1

    See identical proteins and their annotated locations for XP_517657.3

    UniProtKB/TrEMBL
    A0A2I3TGT9, A0A2J8NMM5, A0A6D2WTP7, H2R404
    Related
    ENSPTRP00000088485.1
    Conserved Domains (2) summary
    cd06948
    Location:184 → 419
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
    cd06958
    Location:86 → 158
    NR_DBD_COUP_TF; DNA-binding domain of chicken ovalbumin upstream promoter transcription factors (COUP-TFs) is composed of two C4-type zinc fingers

  2. XM_009448860.4 → XP_009447135.1  COUP transcription factor 1 isoform X2

    See identical proteins and their annotated locations for XP_009447135.1

    UniProtKB/TrEMBL
    A0A2I3TMW0
    Conserved Domains (1) summary
    cd06948
    Location:34 → 269
    NR_LBD_COUP-TF; Ligand binding domain of chicken ovalbumin upstream promoter transcription factors, a member of the nuclear receptor family
Nucleotide Protein
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Molecular Biology Databases
Research Materials