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TRMT2A tRNA methyltransferase 2 homolog A [ Pan troglodytes (chimpanzee) ]

Gene ID: 458660, updated on 17-Aug-2024

Summary

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Official Symbol
TRMT2Aprovided by VGNC
Official Full Name
tRNA methyltransferase 2 homolog Aprovided by VGNC
Primary source
VGNC:VGNC:5987
Locus tag
CK820_G0046126
See related
Ensembl:ENSPTRG00000014074
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 23 NC_086016.1 (22144392..22149873, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 22 NC_072420.1 (15176782..15181894, complement)

Chromosome 23 - NC_086016.1Genomic Context describing neighboring genes Neighboring gene transport and golgi organization 2 homolog Neighboring gene microRNA mir-185 Neighboring gene DGCR8 microprocessor complex subunit Neighboring gene microRNA mir-1306 Neighboring gene small nucleolar RNA SNORA77 Neighboring gene RAN binding protein 1 Neighboring gene zinc finger DHHC-type palmitoyltransferase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (uracil-5-)-methyltransferase homolog A
Names
HpaII tiny fragments locus 9C
TRM2 tRNA methyltransferase 2 homolog A
XP_001167055.1
XP_063664341.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    22144392..22149873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001167055.6 → XP_001167055.1  tRNA (uracil-5-)-methyltransferase homolog A

    See identical proteins and their annotated locations for XP_001167055.1

    UniProtKB/TrEMBL
    A0A2J8Q2G2, A0A2J8Q2I4, A0A6D2WFW8, H2QL94
    Related
    ENSPTRP00000024244.5
    Conserved Domains (2) summary
    COG2265
    Location:179 → 581
    TrmA; tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family [Translation, ribosomal structure and biogenesis]
    cd12439
    Location:68 → 146
    RRM_TRMT2A; RNA recognition motif in tRNA (uracil-5-)-methyltransferase homolog A (TRMT2A) and similar proteins

  2. XM_063808271.1 → XP_063664341.1  tRNA (uracil-5-)-methyltransferase homolog A

    UniProtKB/TrEMBL
    A0A2J8Q2G2, A0A2J8Q2I4, A0A6D2WFW8, H2QL94
Nucleotide Protein
Heading Accession and Version

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