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ARVCF ARVCF delta catenin family member [ Pan troglodytes (chimpanzee) ]

Gene ID: 458656, updated on 17-Aug-2024

Summary

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Official Symbol
ARVCFprovided by VGNC
Official Full Name
ARVCF delta catenin family memberprovided by VGNC
Primary source
VGNC:VGNC:6688
Locus tag
CK820_G0046116
See related
Ensembl:ENSPTRG00000014071
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
24
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 23 NC_086016.1 (21998192..22048146, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 22 NC_072420.1 (15028018..15080528, complement)

Chromosome 23 - NC_086016.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134809737 Neighboring gene thioredoxin reductase 2 Neighboring gene catechol-O-methyltransferase Neighboring gene transport and golgi organization 2 homolog Neighboring gene microRNA mir-185 Neighboring gene microRNA mir-1306 Neighboring gene DGCR8 microprocessor complex subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing regulator ARVCF
Names
armadillo repeat gene deleted in velocardiofacial syndrome
armadillo repeat gene deletes in velocardiofacial syndrome
armadillo repeat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    21998192..22048146 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016939716.4 → XP_016795205.2  splicing regulator ARVCF isoform X4

    UniProtKB/TrEMBL
    H2RDK0
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:656 → 692
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]

  2. XM_016939715.4 → XP_016795204.2  splicing regulator ARVCF isoform X2

    UniProtKB/TrEMBL
    A0A2I3SEF7
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:650 → 686
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]

  3. XM_016939714.4 → XP_016795203.2  splicing regulator ARVCF isoform X1

    UniProtKB/TrEMBL
    H2RDK0
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:656 → 692
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]

  4. XM_054675691.2 → XP_054531666.1  splicing regulator ARVCF isoform X1

    UniProtKB/TrEMBL
    H2RDK0

  5. XM_054675694.2 → XP_054531669.1  splicing regulator ARVCF isoform X7

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  6. XM_063808291.1 → XP_063664361.1  splicing regulator ARVCF isoform X10

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  7. XM_054675692.2 → XP_054531667.1  splicing regulator ARVCF isoform X3

    UniProtKB/TrEMBL
    H2RDK0

  8. XM_016939717.4 → XP_016795206.2  splicing regulator ARVCF isoform X5

    UniProtKB/TrEMBL
    A0A2J8Q2F5, H2RDK0
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:656 → 692
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]

  9. XM_009437808.5 → XP_009436083.3  splicing regulator ARVCF isoform X9

    UniProtKB/TrEMBL
    A0A2I3SEF7
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:650 → 686
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]

  10. XM_054675693.2 → XP_054531668.1  splicing regulator ARVCF isoform X6

    UniProtKB/TrEMBL
    A0A2I3SEF7, A0A2J8Q2F7

  11. XM_063808293.1 → XP_063664363.1  splicing regulator ARVCF isoform X12

    UniProtKB/TrEMBL
    A0A2I3SEF7

  12. XM_063808292.1 → XP_063664362.1  splicing regulator ARVCF isoform X11

    UniProtKB/TrEMBL
    H2RDK0

  13. XM_063808290.1 → XP_063664360.1  splicing regulator ARVCF isoform X5

    UniProtKB/TrEMBL
    A0A2J8Q2F5, H2RDK0

  14. XM_063808295.1 → XP_063664365.1  splicing regulator ARVCF isoform X16

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  15. XM_054675696.2 → XP_054531671.1  splicing regulator ARVCF isoform X15

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  16. XM_054675695.2 → XP_054531670.1  splicing regulator ARVCF isoform X13

    UniProtKB/TrEMBL
    A0A2J8Q2D9, A0A2J8Q2F2

  17. XM_063808294.1 → XP_063664364.1  splicing regulator ARVCF isoform X14

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  18. XM_063808296.1 → XP_063664366.1  splicing regulator ARVCF isoform X17

    UniProtKB/TrEMBL
    A0A2J8Q2D9

  19. XM_514985.8 → XP_514985.4  splicing regulator ARVCF isoform X8

    UniProtKB/TrEMBL
    H2RDK0
    Conserved Domains (3) summary
    smart00185
    Location:432 → 473
    ARM; Armadillo/beta-catenin-like repeats
    pfam00514
    Location:656 → 692
    Arm; Armadillo/beta-catenin-like repeat
    sd00043
    Location:360 → 385
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
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