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MEF2D myocyte enhancer factor 2D [ Pan troglodytes (chimpanzee) ]

Gene ID: 457396, updated on 10-Oct-2024

Summary

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Official Symbol
MEF2Dprovided by VGNC
Official Full Name
myocyte enhancer factor 2Dprovided by VGNC
Primary source
VGNC:VGNC:1316
Locus tag
CK820_G0041313
See related
Ensembl:ENSPTRG00000001460
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See MEF2D in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (92695608..92733298)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (138616434..138654123, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 24 Neighboring gene IQ motif containing GTPase activating protein 3 Neighboring gene small nucleolar RNA U13 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC101058422 Neighboring gene microRNA mir-9-1 Neighboring gene uncharacterized LOC129144410 Neighboring gene Rh family B glycoprotein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myocyte-specific enhancer factor 2D
Names
MADS box transcription enhancer factor 2, polypeptide D (myocyte enhancer factor 2D)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    92695608..92733298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009434442.5 → XP_009432717.1  myocyte-specific enhancer factor 2D isoform X2

    See identical proteins and their annotated locations for XP_009432717.1

    UniProtKB/TrEMBL
    A0A2I3S4K5
    Conserved Domains (3) summary
    COG5068
    Location:1 → 260
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:104 → 150
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  2. XM_009434456.4 → XP_009432731.1  myocyte-specific enhancer factor 2D isoform X4

    See identical proteins and their annotated locations for XP_009432731.1

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2I3SA27, A0A2J8K5C2, A0A6D2XUC4
    Related
    ENSPTRP00000073835.1
    Conserved Domains (3) summary
    COG5068
    Location:1 → 260
    ARG80; Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:104 → 150
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  3. XM_016929173.3 → XP_016784662.1  myocyte-specific enhancer factor 2D isoform X5

    UniProtKB/TrEMBL
    A0A2I3S4K5

  4. XM_063796980.1 → XP_063653050.1  myocyte-specific enhancer factor 2D isoform X6

  5. XM_016929157.3 → XP_016784646.1  myocyte-specific enhancer factor 2D isoform X3

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2J8K5B5, A0A6D2WBA0, H2R268, K7CMA0
    Related
    ENSPTRP00000043478.4
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  6. XM_016929122.3 → XP_016784611.1  myocyte-specific enhancer factor 2D isoform X1

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2I3SAX9, A0A2J8K5D7, A0A6D2Y728
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  7. XM_001165500.7 → XP_001165500.1  myocyte-specific enhancer factor 2D isoform X1

    See identical proteins and their annotated locations for XP_001165500.1

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2I3SAX9, A0A2J8K5D7, A0A6D2Y728
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  8. XM_016929143.3 → XP_016784632.1  myocyte-specific enhancer factor 2D isoform X1

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2I3SAX9, A0A2J8K5D7, A0A6D2Y728
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  9. XM_063796967.1 → XP_063653037.1  myocyte-specific enhancer factor 2D isoform X3

    UniProtKB/TrEMBL
    A0A2J8K5B5, A0A6D2WBA0, H2R268, K7CMA0

  10. XM_016929127.4 → XP_016784616.1  myocyte-specific enhancer factor 2D isoform X1

    UniProtKB/TrEMBL
    A0A2I3S4K5, A0A2I3SAX9, A0A2J8K5D7, A0A6D2Y728
    Conserved Domains (2) summary
    cd00265
    Location:2 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam12347
    Location:97 → 151
    HJURP_C; Holliday junction regulator protein family C-terminal repeat

  11. XM_063796969.1 → XP_063653039.1  myocyte-specific enhancer factor 2D isoform X3

    UniProtKB/TrEMBL
    A0A2J8K5B5, A0A6D2WBA0, H2R268, K7CMA0
Nucleotide Protein
Heading Accession and Version

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