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GARIN5A golgi associated RAB2 interactor 5A [ Pan troglodytes (chimpanzee) ]

Gene ID: 456417, updated on 17-Aug-2024

Summary

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Official Symbol
GARIN5Aprovided by VGNC
Official Full Name
golgi associated RAB2 interactor 5Aprovided by VGNC
Primary source
VGNC:VGNC:3631
Locus tag
CK820_G0051538
See related
Ensembl:ENSPTRG00000011342
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
FAM71E1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 20 NC_072418.2 (53355259..53364566, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 19 NC_072417.1 (53355285..53364604, complement)

Chromosome 20 - NC_072418.2Genomic Context describing neighboring genes Neighboring gene Spi-B transcription factor Neighboring gene myosin binding protein C2 Neighboring gene ER membrane protein complex subunit 10 Neighboring gene uncharacterized LOC100609338

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 5A
Names
family with sequence similarity 71 member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072418.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    53355259..53364566 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_513012.8 → XP_513012.3  Golgi-associated RAB2 interactor protein 5A isoform X2

    See identical proteins and their annotated locations for XP_513012.3

    UniProtKB/TrEMBL
    A0A2J8J1A7, A0A803KK60, K7C974
    Conserved Domains (1) summary
    pfam12480
    Location:160 → 219
    DUF3699; Protein of unknown function (DUF3699)

  2. XM_009436089.5 → XP_009434364.1  Golgi-associated RAB2 interactor protein 5A isoform X1

    UniProtKB/TrEMBL
    A0A2J8J199, A0A6D2XZX7, H2QGX9
    Related
    ENSPTRP00000019482.4
    Conserved Domains (1) summary
    pfam12480
    Location:176 → 235
    DUF3699; Protein of unknown function (DUF3699)
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials