U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SREBF1 sterol regulatory element binding transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 454480, updated on 2-Nov-2023

Summary

Official Symbol
SREBF1provided by VGNC
Official Full Name
sterol regulatory element binding transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:57958
Locus tag
CK820_G0051094
See related
Ensembl:ENSPTRG00000052349
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SREBF1 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2023_04 current NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 17 NC_072415.1 (48157158..48182910)

Chromosome 17 - NC_072415.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104002905 Neighboring gene brain protein I3-like Neighboring gene dynein regulatory complex subunit 3 Neighboring gene target of myb1 like 2 membrane trafficking protein Neighboring gene uncharacterized LOC129137693 Neighboring gene microRNA mir-33b Neighboring gene retinoic acid induced 1 Neighboring gene uncharacterized LOC107969238

Genomic regions, transcripts, and products

Genomic Sequence:
NC_072415.1 Chromosome 17 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
sterol regulatory element-binding protein 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_028858775.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

Genomic

  1. NC_072415.1 Reference NHGRI_mPanTro3-v1.1-hic.freeze_pri

    Range
    48157158..48182910
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054671006.1XP_054526981.1  sterol regulatory element-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3SGI9, A0A2J8J380
  2. XM_054671007.1XP_054526982.1  sterol regulatory element-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2I3SGI9
  3. XM_054671008.1XP_054526983.1  sterol regulatory element-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A2I3SGI9
  4. XM_054671009.1XP_054526984.1  sterol regulatory element-binding protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A2I3SGI9
  5. XM_016932328.3XP_016787817.1  sterol regulatory element-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3SGI9, A0A2J8J362, A0A6D2W7M4, K7CIC8
    Related
    ENSPTRP00000083569.1
    Conserved Domains (3) summary
    cd00083
    Location:321378
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cl25496
    Location:56320
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    cl26464
    Location:87210
    Atrophin-1; Atrophin-1 family